Methanotrophs: discoveries, environmental relevance, and a perspective on current and future applications

S Guerrero-Cruz, A Vaksmaa, MA Horn… - Frontiers in …, 2021 - frontiersin.org
Methane is the final product of the anaerobic decomposition of organic matter. The
conversion of organic matter to methane (methanogenesis) as a mechanism for energy …

Soil aggregate microbial communities: towards understanding microbiome interactions at biologically relevant scales

RL Wilpiszeski, JA Aufrecht, ST Retterer… - Applied and …, 2019 - Am Soc Microbiol
Soils contain a tangle of minerals, water, nutrients, gases, plant roots, decaying organic
matter, and microorganisms which work together to cycle nutrients and support terrestrial …

Revisiting life strategy concepts in environmental microbial ecology

A Ho, DP Di Lonardo… - FEMS microbiology …, 2017 - academic.oup.com
Microorganisms are physiologically diverse, possessing disparate genomic features and
mechanisms for adaptation (functional traits), which reflect on their associated life strategies …

Below‐ground connections underlying above‐ground food production: a framework for optimising ecological connections in the rhizosphere

FT de Vries, MD Wallenstein - Journal of Ecology, 2017 - Wiley Online Library
Healthy soils that contain an active microbiome and food web are critical to sustainably
produce food for a growing global human population. Many studies have focussed on the …

Response of soil microbial communities to elevated antimony and arsenic contamination indicates the relationship between the innate microbiota and contaminant …

W Sun, E Xiao, T Xiao, V Krumins, Q Wang… - … science & technology, 2017 - ACS Publications
Mining of sulfide ore deposits containing metalloids, such as antimony and arsenic, has
introduced serious soil contamination around the world, posing severe threats to food safety …

Environmental structure impacts microbial composition and secondary metabolism

EN Junkins, JB McWhirter, LI McCall… - ISME …, 2022 - academic.oup.com
Determining the drivers of microbial community assembly is a central theme of microbial
ecology, and chemical ecologists seek to characterize how secondary metabolites mediate …

Long‐term warming effects on the microbiome and nifH gene abundance of a common moss species in sub‐Arctic tundra

IJ Klarenberg, C Keuschnig… - New …, 2022 - Wiley Online Library
Bacterial communities form the basis of biogeochemical processes and determine plant
growth and health. Mosses harbour diverse bacterial communities that are involved in …

Microbial diversity and community structure dynamics in acid mine drainage: Acidic fire with dissolved heavy metals

W Sajjad, N Ilahi, S Kang, A Bahadur… - Science of The Total …, 2024 - Elsevier
Acid mine drainage (AMD) is one of the leading causes of environmental pollution and is
linked to public health and ecological consequences. Microbes-mineral interaction …

Variation in abundance, diversity, and composition of nirK and nirS containing denitrifying bacterial communities in a red paddy soil as affected by combined organic …

X Xiao, G Xie, Z Yang, N He, D Yang, M Liu - Applied Soil Ecology, 2021 - Elsevier
The long-term effects of different combined organic–chemical fertilizer regimes on
denitrifying communities remain unclear. In this study, we performed quantitative PCR and …

You must choose, but choose wisely: Model-based approaches for microbial community analysis

MFA Leite, EE Kuramae - Soil Biology and Biochemistry, 2020 - Elsevier
Soil microbial community data produced by next-generation sequencing platforms has
introduced a new era in microbial ecology studies but poses a challenge for data analysis …