[HTML][HTML] Portable nanopore-sequencing technology: Trends in development and applications

P Chen, Z Sun, J Wang, X Liu, Y Bai, J Chen… - Frontiers in …, 2023 - frontiersin.org
Sequencing technology is the most commonly used technology in molecular biology
research and an essential pillar for the development and applications of molecular biology …

[HTML][HTML] Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

HJ Lee, SU Greer, DS Pavlichin, B Zhou, AE Urban… - Cell Reports …, 2023 - cell.com
The human pangenome, a new reference sequence, addresses many limitations of the
current GRCh38 reference. The first release is based on 94 high-quality haploid assemblies …

[HTML][HTML] CleanSeq: A pipeline for contamination detection, cleanup, and mutation verifications from microbial genome sequencing data

C Wang, Y Xia, Y Liu, C Kang, N Lu, D Tian, H Lu… - Applied Sciences, 2022 - mdpi.com
Contaminations frequently occur in bacterial cultures, which significantly affect the
reproducibility and reliability of the results from whole-genome sequencing (WGS) …

An alignment- and reference-free strategy using k-mer present pattern for population genomic analyses

G Shi, Y Dai, D Zhou, M Chen, J Zhang, Y Bi, S Liu… - Mycology, 2024 - Taylor & Francis
Pangenomes are replacing single reference genomes to capture all variants within a
species or clade, but their analysis predominantly leverages graph-based methods that …

Analyzing DNA Pattern Matching through String Similarity Measurements in Cancer Sequence Data

A Lincy, V Ebenezer, AX VM, AJ Isaac… - 2023 International …, 2023 - ieeexplore.ieee.org
Cancer is a deadly disease with actual cause still being an unknown mystery. Classifying
the different kinds of tumors is rather essential for diagnosing cancer and discovering new …

The Human Pangenome's sequence conservation reveals a landscape of polymorphic structural variations

HJ Lee, SU Greer, DS Pavlichin, CR Hughes, B Zhou… - bioRxiv, 2022 - biorxiv.org
ABSTRACT The Human Pangenome is a new reference build that addresses many of the
limitations of the current reference. The first release is based on 94 high-quality haploid …

Search engine for genomic sequencing data

L Robidou - 2023 - theses.hal.science
High throughput sequencing technologies generate massive amounts of biological
sequence datasets as costs fall. One of the current algorithmic challenges for exploiting …

[PDF][PDF] A Review of K-mer Frequency-Based Statistics in Biological Sequence Data Processing and Presentation

Z Su - Scientific Journal of Intelligent Systems Research …, 2022 - sjisr.org
K-mer frequency statistics can be used to reveal subsequence distribution patterns in
biological sequences. It is a crucial instrument for measuring sequence similarity and thus …

[HTML][HTML] A survey of k-mer methods and applications in bioinformatics

C Moeckel, M Mareboina, MA Konnaris… - Computational and …, 2024 - Elsevier
The rapid progression of genomics and proteomics has been driven by the advent of
advanced sequencing technologies, large, diverse, and readily available omics datasets …