New insights into the taxonomy of bacteria in the genomic era and a case study with rhizobia

LC Ferraz Helene, MS Klepa… - International Journal of …, 2022 - Wiley Online Library
Since early studies, the history of prokaryotes taxonomy has dealt with many changes driven
by the development of new and more robust technologies. As a result, the number of new …

[HTML][HTML] A light life together: photosensing in the plant microbiota

A Losi, W Gärtner - Photochemical & Photobiological Sciences, 2021 - Springer
Bacteria and fungi of the plant microbiota can be phytopathogens, parasites or symbionts
that establish mutually advantageous relationships with plants. They are often rich in …

[HTML][HTML] A genomotaxonomy view of the Bradyrhizobium genus

E Ormeño-Orrillo, E Martínez-Romero - Frontiers in microbiology, 2019 - frontiersin.org
Whole genome analysis of the Bradyrhizobium genus using average nucleotide identity
(ANI) and phylogenomics showed the genus to be essentially monophyletic with seven …

[HTML][HTML] Effects of microplastics on common bean rhizosphere bacterial communities

F Meng, P Harkes, JJM van Steenbrugge, V Geissen - Applied Soil Ecology, 2023 - Elsevier
Microplastic pollution in terrestrial ecosystems is a growing concern due to its potential
influences on soil properties and crop growth. Little is known about the effects of …

All ANIs are not created equal: implications for prokaryotic species boundaries and integration of ANIs into polyphasic taxonomy

M Palmer, ET Steenkamp, J Blom… - … of Systematic and …, 2020 - microbiologyresearch.org
In prokaryotic taxonomy, a set of criteria is commonly used to delineate species. These
criteria are generally based on cohesion at the phylogenetic, phenotypic and genomic …

Evolutionary origin and ecological implication of a unique nif island in free-living Bradyrhizobium lineages

J Tao, S Wang, T Liao, H Luo - The ISME Journal, 2021 - academic.oup.com
The alphaproteobacterial genus Bradyrhizobium has been best known as N2-fixing
members that nodulate legumes, supported by the nif and nod gene clusters. Recent …

Widespread Bradyrhizobium distribution of diverse Type III effectors that trigger legume nodulation in the absence of Nod factor

A Camuel, A Teulet, M Carcagno, F Haq… - The ISME …, 2023 - academic.oup.com
The establishment of the rhizobium-legume symbiosis is generally based on plant
perception of Nod factors (NFs) synthesized by the bacteria. However, some Bradyrhizobium …

Genomic insights into a free-living, nitrogen-fixing but non nodulating novel species of Bradyrhizobium sediminis from freshwater sediment: Three isolates with the …

CZ Jin, XW Wu, Y Zhuo, Y Yang, T Li, FJ Jin… - Systematic and Applied …, 2022 - Elsevier
Three bacterial strains isolated from a sediment sample collected at a water depth of 4 m
from the Huaihe River in China were characterized. Phylogenetic investigation of the 16S …

Competition for electrons favours N2O reduction in denitrifying Bradyrhizobium isolates

Y Gao, D Mania, SA Mousavi, P Lycus… - Environmental …, 2021 - Wiley Online Library
Bradyrhizobia are common members of soil microbiomes and known as N2‐fixing symbionts
of economically important legumes. Many are also denitrifiers, which can act as sinks or …

[HTML][HTML] Bradyrhizobium xenonodulans sp. nov. isolated from nodules of Australian Acacia species invasive to South Africa

R Claassens, SN Venter, CW Beukes… - Systematic and Applied …, 2023 - Elsevier
A genealogical concordance approach was used to delineate strains isolated from Acacia
dealbata and Acacia mearnsii root nodules in South Africa. These isolates form part of …