Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

NLR receptors in plant immunity: making sense of the alphabet soup

MP Contreras, D Lüdke, H Pai, AA Toghani… - EMBO …, 2023 - embopress.org
Plants coordinately use cell‐surface and intracellular immune receptors to perceive
pathogens and mount an immune response. Intracellular events of pathogen recognition are …

Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding

J Hu, B Chen, J Zhao, F Zhang, T Xie, K Xu, G Gao… - Nature Genetics, 2022 - nature.com
Rapeseed (Brassica napus L.) is an important oil-producing crop for the world. Its
adaptation, yield and quality have been considerably improved in recent decades, but the …

1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

NLR network mediates immunity to diverse plant pathogens

CH Wu, A Abd-El-Haliem, TO Bozkurt… - Proceedings of the …, 2017 - National Acad Sciences
Both plants and animals rely on nucleotide-binding domain and leucine-rich repeat-
containing (NLR) proteins to respond to invading pathogens and activate immune …

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

WB Jiao, K Schneeberger - Nature communications, 2020 - nature.com
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …

Natural variations and genome-wide association studies in crop plants

X Huang, B Han - Annual review of plant biology, 2014 - annualreviews.org
Natural variants of crops are generated from wild progenitor plants under both natural and
human selection. Diverse crops that are able to adapt to various environmental conditions …

Genome-wide association studies of 14 agronomic traits in rice landraces

X Huang, X Wei, T Sang, Q Zhao, QI Feng, Y Zhao… - Nature …, 2010 - nature.com
Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to
various agro-climatic conditions is important to world food security. Here we have …

Insights into the maize pan-genome and pan-transcriptome

CN Hirsch, JM Foerster, JM Johnson, RS Sekhon… - The Plant …, 2014 - academic.oup.com
Genomes at the species level are dynamic, with genes present in every individual (core) and
genes in a subset of individuals (dispensable) that collectively constitute the pan-genome …

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

X Huang, Y Zhao, X Wei, C Li, A Wang, Q Zhao, W Li… - Nature …, 2012 - nature.com
A high-density haplotype map recently enabled a genome-wide association study (GWAS)
in a population of indica subspecies of Chinese rice landraces. Here we extend this …