Trouble is coming: Signaling pathways that regulate general stress responses in bacteria

S Gottesman - Journal of Biological Chemistry, 2019 - ASBMB
Bacteria can rapidly and reversibly respond to changing environments via complex
transcriptional and post-transcriptional regulatory mechanisms. Many of these adaptations …

Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

SM Chiang, HE Schellhorn - Archives of biochemistry and biophysics, 2012 - Elsevier
Oxidative stress, through the production of reactive oxygen species, is a natural
consequence of aerobic metabolism. Escherichia coli has several major regulators activated …

Disentangling direct from indirect relationships in association networks

N Xiao, A Zhou, ML Kempher… - Proceedings of the …, 2022 - National Acad Sciences
Networks are vital tools for understanding and modeling interactions in complex systems in
science and engineering, and direct and indirect interactions are pervasive in all types of …

Metabolomic and transcriptomic stress response of Escherichia coli

S Jozefczuk, S Klie, G Catchpole… - Molecular systems …, 2010 - embopress.org
Environmental fluctuations lead to a rapid adjustment of the physiology of Escherichia coli,
necessitating changes on every level of the underlying cellular and molecular network. Thus …

Function, Evolution, and Composition of the RpoS Regulon in Escherichia coli

HE Schellhorn - Frontiers in microbiology, 2020 - frontiersin.org
For many bacteria, successful growth and survival depends on efficient adaptation to rapidly
changing conditions. In Escherichia coli, the RpoS alternative sigma factor plays a central …

Stress-induced mutagenesis in bacteria

PL Foster - Critical reviews in biochemistry and molecular biology, 2007 - Taylor & Francis
Bacteria spend their lives buffeted by changing environmental conditions. To adapt to and
survive these stresses, bacteria have global response systems that result in sweeping …

Long-term survival during stationary phase: evolution and the GASP phenotype

SE Finkel - Nature Reviews Microbiology, 2006 - nature.com
The traditional view of the stationary phase of the bacterial life cycle, obtained using
standard laboratory culture practices, although useful, might not always provide us with the …

Mini-review: Biofilm responses to oxidative stress

M Gambino, F Cappitelli - Biofouling, 2016 - Taylor & Francis
Biofilms constitute the predominant microbial style of life in natural and engineered
ecosystems. Facing harsh environmental conditions, microorganisms accumulate reactive …

Increased Antibiotic Resistance of Escherichia coli in Mature Biofilms

A Ito, A Taniuchi, T May, K Kawata… - Applied and …, 2009 - Am Soc Microbiol
Biofilms are considered to be highly resistant to antimicrobial agents. Several mechanisms
have been proposed to explain this high resistance of biofilms, including restricted …

Regulation Systems of Bacteria such as Escherichia coli in Response to Nutrient Limitation and Environmental Stresses

K Shimizu - Metabolites, 2013 - mdpi.com
An overview was made to understand the regulation system of a bacterial cell such as
Escherichia coli in response to nutrient limitation such as carbon, nitrogen, phosphate …