Quantitative interactome analysis with chemical cross-linking and mass spectrometry
Structural plasticity and dynamic protein–protein interactions are critical determinants of
protein function within living systems. Quantitative chemical cross-linking with mass …
protein function within living systems. Quantitative chemical cross-linking with mass …
Protein structure prediction with mass spectrometry data
Knowledge of protein structure is crucial to our understanding of biological function and is
routinely used in drug discovery. High-resolution techniques to determine the three …
routinely used in drug discovery. High-resolution techniques to determine the three …
In-cell labeling and mass spectrometry for systems-level structural biology
Biological systems have evolved to utilize proteins to accomplish nearly all functional roles
needed to sustain life. A majority of biological functions occur within the crowded …
needed to sustain life. A majority of biological functions occur within the crowded …
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics
C Gueto-Tettay, D Tang, L Happonen… - PLoS Computational …, 2023 - journals.plos.org
Generating and analyzing overlapping peptides through multienzymatic digestion is an
efficient procedure for de novo protein using from bottom-up mass spectrometry (MS) …
efficient procedure for de novo protein using from bottom-up mass spectrometry (MS) …
Probing Protein Structural Changes in Alzheimer's Disease via Quantitative Cross-linking Mass Spectrometry
Alzheimer's disease (AD) is a progressive neurological disorder featuring abnormal protein
aggregation in the brain, including the pathological hallmarks of amyloid plaques and …
aggregation in the brain, including the pathological hallmarks of amyloid plaques and …
Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking
The exploration of protein structure and function stands at the forefront of life science and
represents an ever‐expanding focus in the development of proteomics. As mass …
represents an ever‐expanding focus in the development of proteomics. As mass …
Proteomic approaches to unravel mechanisms of antibiotic resistance and immune evasion of bacterial pathogens
The profound effects of and distress caused by the global COVID-19 pandemic highlighted
what has been known in the health sciences a long time ago: that bacteria, fungi, viruses …
what has been known in the health sciences a long time ago: that bacteria, fungi, viruses …
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data
H Khakzad, L Happonen, J Malmström… - …, 2021 - academic.oup.com
Protein–protein interactions (PPIs) are central in many biological processes but difficult to
characterize, especially in complex, unfractionated samples. Chemical cross-linking …
characterize, especially in complex, unfractionated samples. Chemical cross-linking …
The Great Escape-Investigating Complement Evasion Mechanisms in Pathogenic Bacteria
M Magda - 2024 - portal.research.lu.se
The complement system, a crucial part of the innate immune system, protects the human
body during bacterial infections. Complement comprises three pathways, classical, lectin …
body during bacterial infections. Complement comprises three pathways, classical, lectin …
[PDF][PDF] Quaternary structure modeling through chemical cross-linking mass spectrometry: Extending tx-ms jupyter reports
H Khakzad, S Vermeul, L Malmström - Journal of visualized …, 2021 - hal.science
Protein-protein interactions can be challenging to study yet provide insights into how
biological systems function. Targeted cross-linking mass spectrometry (TX-MS), a method …
biological systems function. Targeted cross-linking mass spectrometry (TX-MS), a method …