Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Strategies for determining kinship in wild populations using genetic data

V Städele, L Vigilant - Ecology and Evolution, 2016 - Wiley Online Library
Abstract Knowledge of kin relationships between members of wild animal populations has
broad application in ecology and evolution research by allowing the investigation of …

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms.

JE Seeb, G Carvalho, L Hauser… - Molecular ecology …, 2011 - search.ebscohost.com
An introduction to articles published within the issue is presented, including an approach to
discover single-nucleotide polymorphisms (SNP) for population genetics study of the ringed …

Adaptations to climate-mediated selective pressures in sheep

FH Lv, S Agha, J Kantanen, L Colli… - Molecular biology …, 2014 - academic.oup.com
Following domestication, sheep (Ovis aries) have become essential farmed animals across
the world through adaptation to a diverse range of environments and varied production …

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

GJ McKinney, WA Larson, LW Seeb… - Molecular ecology …, 2017 - Wiley Online Library
In their recently corrected manuscript,“Breaking RAD: An evaluation of the utility of restriction
site associated DNA sequencing for genome scans of adaptation”, Lowry et al. argue that …

The application of genome-wide SNP genotyping methods in studies on livestock genomes

A Gurgul, E Semik, K Pawlina, T Szmatoła… - Journal of applied …, 2014 - Springer
Animal genomics is currently undergoing dynamic development, which is driven by the
flourishing of high-throughput genome analysis methods. Recently, a large number of …

Genome‐wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations

DJ Goedbloed, HJ Megens, P Van Hooft… - Molecular …, 2013 - Wiley Online Library
Present‐day genetic introgression from domestic pigs into European wild boar has been
suggested in various studies. However, no hybrids have been identified beyond doubt …

Genomic signatures of adaptive introgression from European mouflon into domestic sheep

M Barbato, F Hailer, P Orozco-terWengel, J Kijas… - Scientific Reports, 2017 - nature.com
Mouflon (Ovis aries musimon) became extinct from mainland Europe after the Neolithic, but
remnant populations from the Mediterranean islands of Corsica and Sardinia have been …

Genomic reconstruction of the history of native sheep reveals the peopling patterns of nomads and the expansion of early pastoralism in East Asia

YX Zhao, J Yang, FH Lv, XJ Hu, XL Xie… - Molecular Biology …, 2017 - academic.oup.com
China has a rich resource of native sheep (Ovis aries) breeds associated with historical
movements of several nomadic societies. However, the history of sheep and the associated …

Estimating genome-wide heterozygosity: effects of demographic history and marker type

JM Miller, RM Malenfant, P David, CS Davis, J Poissant… - Heredity, 2014 - nature.com
Heterozygosity–fitness correlations (HFCs) are often used to link individual genetic variation
to differences in fitness. However, most studies examining HFCs find weak or no …