Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

[HTML][HTML] From diversity to complexity: Microbial networks in soils

K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …

Hyphosphere microbiome of arbuscular mycorrhizal fungi: a realm of unknowns

M Faghihinia, J Jansa, LJ Halverson… - Biology and fertility of …, 2023 - Springer
The extraradical hyphae-associated microbiome of arbuscular mycorrhizal fungi (AMF), the
“hyphosphere microbiome,” harbors a diverse reservoir of microbes. The biological …

Consider the anoxic microsite: acknowledging and appreciating spatiotemporal redox heterogeneity in soils and sediments

EM Lacroix, M Aeppli, K Boye, E Brodie… - ACS Earth and Space …, 2023 - ACS Publications
Reduction–oxidation (redox) reactions underlie essentially all biogeochemical cycles. Like
most soil properties and processes, redox is spatiotemporally heterogeneous. However …

Waste not, want not: revisiting the analysis that called into question the practice of rarefaction

PD Schloss - Msphere, 2024 - Am Soc Microbiol
ABSTRACT In 2014, McMurdie and Holmes published the provocatively titled “Waste not,
want not: why rarefying microbiome data is inadmissible.” The claims of their study have …

Fungal communities in soils under global change

P Baldrian, L Bell-Dereske, C Lepinay… - Studies in …, 2022 - ingentaconnect.com
Soil fungi play indispensable roles in all ecosystems including the recycling of organic
matter and interactions with plants, both as symbionts and pathogens. Past observations …

A critical review of the use of lipid signature molecules for the quantification of arbuscular mycorrhiza fungi

PA Olsson, Y Lekberg - Soil Biology and Biochemistry, 2022 - Elsevier
Tools for accurate measurements of microbial biomass/abundance are imperative in soil
ecology. This perspective was prompted by a lack of consistency in how the neutral lipid fatty …

Pesticide soil microbial toxicity: setting the scene for a new pesticide risk assessment for soil microorganisms (IUPAC Technical Report)

DG Karpouzas, Z Vryzas… - Pure and Applied …, 2022 - degruyter.com
Pesticides constitute an integral part of modern agriculture. However, there are still concerns
about their effects on non-target organisms. To address this the European Commission has …

Arbuscular mycorrhiza and nitrification: disentangling processes and players by using synthetic nitrification inhibitors

M Dudáš, P Pjevac, M Kotianová… - Applied and …, 2022 - Am Soc Microbiol
Both plants and their associated arbuscular mycorrhizal (AM) fungi require nitrogen (N) for
their metabolism and growth. This can result in both positive and negative effects of AM …

The predictive power of phylogeny on growth rates in soil bacterial communities

J Walkup, C Dang, RL Mau, M Hayer… - ISME …, 2023 - academic.oup.com
Predicting ecosystem function is critical to assess and mitigate the impacts of climate
change. Quantitative predictions of microbially mediated ecosystem processes are typically …