Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
[HTML][HTML] From diversity to complexity: Microbial networks in soils
K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …
organismal associations, for example in food webs, plant-plant or plant-animal interactions …
Hyphosphere microbiome of arbuscular mycorrhizal fungi: a realm of unknowns
M Faghihinia, J Jansa, LJ Halverson… - Biology and fertility of …, 2023 - Springer
The extraradical hyphae-associated microbiome of arbuscular mycorrhizal fungi (AMF), the
“hyphosphere microbiome,” harbors a diverse reservoir of microbes. The biological …
“hyphosphere microbiome,” harbors a diverse reservoir of microbes. The biological …
Consider the anoxic microsite: acknowledging and appreciating spatiotemporal redox heterogeneity in soils and sediments
Reduction–oxidation (redox) reactions underlie essentially all biogeochemical cycles. Like
most soil properties and processes, redox is spatiotemporally heterogeneous. However …
most soil properties and processes, redox is spatiotemporally heterogeneous. However …
Waste not, want not: revisiting the analysis that called into question the practice of rarefaction
PD Schloss - Msphere, 2024 - Am Soc Microbiol
ABSTRACT In 2014, McMurdie and Holmes published the provocatively titled “Waste not,
want not: why rarefying microbiome data is inadmissible.” The claims of their study have …
want not: why rarefying microbiome data is inadmissible.” The claims of their study have …
Fungal communities in soils under global change
P Baldrian, L Bell-Dereske, C Lepinay… - Studies in …, 2022 - ingentaconnect.com
Soil fungi play indispensable roles in all ecosystems including the recycling of organic
matter and interactions with plants, both as symbionts and pathogens. Past observations …
matter and interactions with plants, both as symbionts and pathogens. Past observations …
A critical review of the use of lipid signature molecules for the quantification of arbuscular mycorrhiza fungi
Tools for accurate measurements of microbial biomass/abundance are imperative in soil
ecology. This perspective was prompted by a lack of consistency in how the neutral lipid fatty …
ecology. This perspective was prompted by a lack of consistency in how the neutral lipid fatty …
Pesticide soil microbial toxicity: setting the scene for a new pesticide risk assessment for soil microorganisms (IUPAC Technical Report)
DG Karpouzas, Z Vryzas… - Pure and Applied …, 2022 - degruyter.com
Pesticides constitute an integral part of modern agriculture. However, there are still concerns
about their effects on non-target organisms. To address this the European Commission has …
about their effects on non-target organisms. To address this the European Commission has …
Arbuscular mycorrhiza and nitrification: disentangling processes and players by using synthetic nitrification inhibitors
M Dudáš, P Pjevac, M Kotianová… - Applied and …, 2022 - Am Soc Microbiol
Both plants and their associated arbuscular mycorrhizal (AM) fungi require nitrogen (N) for
their metabolism and growth. This can result in both positive and negative effects of AM …
their metabolism and growth. This can result in both positive and negative effects of AM …
The predictive power of phylogeny on growth rates in soil bacterial communities
Predicting ecosystem function is critical to assess and mitigate the impacts of climate
change. Quantitative predictions of microbially mediated ecosystem processes are typically …
change. Quantitative predictions of microbially mediated ecosystem processes are typically …