Gene regulation in time and space during X-chromosome inactivation

A Loda, S Collombet, E Heard - Nature Reviews Molecular Cell Biology, 2022 - nature.com
X-chromosome inactivation (XCI) is the epigenetic mechanism that ensures X-linked dosage
compensation between cells of females (XX karyotype) and males (XY). XCI is essential for …

The role of 3D genome organization in development and cell differentiation

H Zheng, W Xie - Nature reviews Molecular cell biology, 2019 - nature.com
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …

Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression

JM Engreitz, N Ollikainen, M Guttman - Nature reviews Molecular cell …, 2016 - nature.com
Over the past decade, it has become clear that mammalian genomes encode thousands of
long non-coding RNAs (lncRNAs), many of which are now implicated in diverse biological …

Chromatin architecture reorganization during stem cell differentiation

JR Dixon, I Jung, S Selvaraj, Y Shen… - Nature, 2015 - nature.com
Higher-order chromatin structure is emerging as an important regulator of gene expression.
Although dynamic chromatin structures have been identified in the genome, the full scope of …

[HTML][HTML] Long noncoding RNAs: cellular address codes in development and disease

PJ Batista, HY Chang - Cell, 2013 - cell.com
In biology as in real estate, location is a cardinal organizational principle that dictates the
accessibility and flow of informational traffic. An essential question in nuclear organization is …

CTCF and cohesin in genome folding and transcriptional gene regulation

M Merkenschlager, EP Nora - Annual review of genomics and …, 2016 - annualreviews.org
Genome function, replication, integrity, and propagation rely on the dynamic structural
organization of chromosomes during the cell cycle. Genome folding in interphase provides …

A high-resolution map of the three-dimensional chromatin interactome in human cells

F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen… - Nature, 2013 - nature.com
A large number of cis-regulatory sequences have been annotated in the human genome,,
but defining their target genes remains a challenge. One strategy is to identify the long …

Structural organization of the inactive X chromosome in the mouse

L Giorgetti, BR Lajoie, AC Carter, M Attia, Y Zhan, J Xu… - Nature, 2016 - nature.com
X-chromosome inactivation (XCI) involves major reorganization of the X chromosome as it
becomes silent and heterochromatic. During female mammalian development, XCI is …

Spatial partitioning of the regulatory landscape of the X-inactivation centre

EP Nora, BR Lajoie, EG Schulz, L Giorgetti, I Okamoto… - Nature, 2012 - nature.com
In eukaryotes transcriptional regulation often involves multiple long-range elements and is
influenced by the genomic environment. A prime example of this concerns the mouse X …

Genome-wide mapping and analysis of chromosome architecture

AD Schmitt, M Hu, B Ren - Nature reviews Molecular cell biology, 2016 - nature.com
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …