Enhancing the promise of drug repositioning through genetics

JLE Pritchard, TA O'Mara, DM Glubb - Frontiers in pharmacology, 2017 - frontiersin.org
The development of new drugs has become challenging as the necessary investments in
time and money have increased while drug approval rates have decreased. A potential …

Molecular mechanisms underlying noncoding risk variations in psychiatric genetic studies

X Xiao, H Chang, M Li - Molecular psychiatry, 2017 - nature.com
Recent large-scale genetic approaches such as genome-wide association studies have
allowed the identification of common genetic variations that contribute to risk architectures of …

Genome-wide compendium and functional assessment of in vivo heart enhancers

DE Dickel, I Barozzi, Y Zhu, Y Fukuda-Yuzawa… - Nature …, 2016 - nature.com
Whole-genome sequencing is identifying growing numbers of non-coding variants in human
disease studies, but the lack of accurate functional annotations prevents their interpretation …

3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes

Y Lu, C Quan, H Chen, X Bo, C Zhang - Nucleic acids research, 2016 - academic.oup.com
The vast noncoding portion of the human genome harbors a rich array of functional
elements and disease-causing regulatory variants. Recent high-throughput chromosome …

Human retrotransposon insertion polymorphisms are associated with health and disease via gene regulatory phenotypes

L Wang, ET Norris, IK Jordan - Frontiers in Microbiology, 2017 - frontiersin.org
The human genome hosts several active families of transposable elements (TEs), including
the Alu, LINE-1, and SVA retrotransposons that are mobilized via reverse transcription of …

OncoBase: a platform for decoding regulatory somatic mutations in human cancers

X Li, L Shi, Y Wang, J Zhong, X Zhao… - Nucleic Acids …, 2019 - academic.oup.com
Whole-exome and whole-genome sequencing have revealed millions of somatic mutations
associated with different human cancers, and the vast majority of them are located outside of …

EAGLE: an algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions

T Gao, J Qian - PLoS computational biology, 2019 - journals.plos.org
Long-range regulation by distal enhancers is crucial for many biological processes. The
existing methods for enhancer-target gene prediction often require many genomic features …

[HTML][HTML] Structural variants as a basis for targeted therapies in hematological malignancies

J Schütte, J Reusch, C Khandanpour… - Frontiers in …, 2019 - frontiersin.org
Structural variants (SV) are changes in the genomic landscape that can alter gene
expression levels and thus lead to disease development. The most common and best …

Bioinformatics methods for modeling microRNA regulatory networks in cancer

T Pan, Y Gao, G Xu, Y Li - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
MicroRNAs (miRNAs) play important roles in the physiology and development of cancers.
The increase of multidimensional molecular profiles of tumor patients generated by high …

Trailblazing Contemporary Frameworks for Drug Repurposing: A Saga on Drugs' Expedition to Disinter the Veiled Destiny

KS Satish, GR Saraswathy, GNS Hemasree… - Drugs and a …, 2023 - Springer
Huge fiscal investments in conjunction with high attrition rates encountered during de novo
drug discovery delay the timelines required for development and entry of novel drug …