An introduction to NMR-based approaches for measuring protein dynamics
IR Kleckner, MP Foster - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2011 - Elsevier
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …
characterized by a set of conformations that undergo continuous exchange within a …
[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …
cell factories that convert sugars into chemicals. These processes range from the production …
The coefficient of determination R-squared is more informative than SMAPE, MAE, MAPE, MSE and RMSE in regression analysis evaluation
Regression analysis makes up a large part of supervised machine learning, and consists of
the prediction of a continuous independent target from a set of other predictor variables. The …
the prediction of a continuous independent target from a set of other predictor variables. The …
Predicting perturbation patterns from the topology of biological networks
M Santolini, AL Barabási - Proceedings of the National …, 2018 - National Acad Sciences
High-throughput technologies, offering an unprecedented wealth of quantitative data
underlying the makeup of living systems, are changing biology. Notably, the systematic …
underlying the makeup of living systems, are changing biology. Notably, the systematic …
Structural identifiability of dynamic systems biology models
AF Villaverde, A Barreiro… - PLoS computational …, 2016 - journals.plos.org
A powerful way of gaining insight into biological systems is by creating a nonlinear
differential equation model, which usually contains many unknown parameters. Such a …
differential equation model, which usually contains many unknown parameters. Such a …
Universally sloppy parameter sensitivities in systems biology models
RN Gutenkunst, JJ Waterfall, FP Casey… - PLoS computational …, 2007 - journals.plos.org
Quantitative computational models play an increasingly important role in modern biology.
Such models typically involve many free parameters, and assigning their values is often a …
Such models typically involve many free parameters, and assigning their values is often a …
[HTML][HTML] The first five seconds in the life of a clathrin-coated pit
Coated pits assemble by growth of a clathrin lattice, which is linked by adaptors to the
underlying membrane. How does this process start? We used live-cell TIRF imaging with …
underlying membrane. How does this process start? We used live-cell TIRF imaging with …
Stochastic modelling for quantitative description of heterogeneous biological systems
DJ Wilkinson - Nature Reviews Genetics, 2009 - nature.com
Two related developments are currently changing traditional approaches to computational
systems biology modelling. First, stochastic models are being used increasingly in …
systems biology modelling. First, stochastic models are being used increasingly in …
Identifiability analysis for stochastic differential equation models in systems biology
Mathematical models are routinely calibrated to experimental data, with goals ranging from
building predictive models to quantifying parameters that cannot be measured. Whether or …
building predictive models to quantifying parameters that cannot be measured. Whether or …
Cargo and dynamin regulate clathrin-coated pit maturation
Total internal reflection fluorescence microscopy (TIR-FM) has become a powerful tool for
studying clathrin-mediated endocytosis. However, due to difficulties in tracking and …
studying clathrin-mediated endocytosis. However, due to difficulties in tracking and …