Molecular basis of human immunodeficiency virus type 1 drug resistance: overview and recent developments

L Menéndez-Arias - Antiviral research, 2013 - Elsevier
The introduction of potent combination therapies in the mid-90s had a tremendous effect on
AIDS mortality. However, drug resistance has been a major factor contributing to …

Drug resistance in non-B subtype HIV-1: impact of HIV-1 reverse transcriptase inhibitors

K Singh, JA Flores, KA Kirby, U Neogi, A Sonnerborg… - Viruses, 2014 - mdpi.com
Human immunodeficiency virus (HIV) causes approximately 2.5 million new infections every
year, and nearly 1.6 million patients succumb to HIV each year. Several factors, including …

Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture

G Martrus, M Nevot, C Andres, B Clotet, MA Martinez - Retrovirology, 2013 - Springer
Background Human immunodeficiency virus type 1 (HIV-1) has a biased nucleotide
composition different from human genes. This raises the question of how evolution has …

[HTML][HTML] Novel RNase H inhibitors blocking RNA-directed strand displacement DNA synthesis by HIV-1 reverse transcriptase

S Martín-Alonso, D Kang, JM Del Río… - Journal of molecular …, 2022 - Elsevier
In retroviruses, strand displacement DNA-dependent DNA polymerization catalyzed by the
viral reverse transcriptase (RT) is required to synthesize double-stranded proviral DNA. In …

Charge Engineering of the Nucleic Acid Binding Cleft of a Thermostable HIV-1 Reverse Transcriptase Reveals Key Interactions and a Novel Mechanism of RNase H …

JM Del Río, N López-Carrobles… - Journal of Molecular …, 2023 - Elsevier
Coupled with PCR, reverse transcriptases (RTs) have been widely used for RNA detection
and gene expression analysis. Increased thermostability and nucleic acid binding affinity are …

Effects of HIV-1 reverse transcriptase connection subdomain mutations on polypurine tract removal and initiation of (+)-strand DNA synthesis

G Betancor, M Alvarez, B Marcelli, C Andrés… - Nucleic acids …, 2015 - academic.oup.com
Abstract HIV-1 reverse transcriptase (RT) connection subdomain mutations at positions 348,
369 and 376 have been associated with resistance to non-nucleoside RT inhibitors …

Biochemical characterization of a multi-drug resistant HIV-1 subtype AG reverse transcriptase: antagonism of AZT discrimination and excision pathways and sensitivity …

A Schneider, A Corona, I Spöring, M Jordan… - Nucleic acids …, 2016 - academic.oup.com
We analyzed a multi-drug resistant (MR) HIV-1 reverse transcriptase (RT), subcloned from a
patient-derived subtype CRF02_AG, harboring 45 amino acid exchanges, amongst them …

HIV-1 lethality and loss of Env protein expression induced by single synonymous substitutions in the virus genome intronic-splicing silencer

A Jordan-Paiz, M Nevot, K Lamkiewicz… - Journal of …, 2020 - Am Soc Microbiol
Synonymous genome recoding has been widely used to study different aspects of virus
biology. Codon usage affects the temporal regulation of viral gene expression. In this study …

The hepatitis B virus polymerase

DN Clark, R Tajwar, J Hu, JE Tavis - The Enzymes, 2021 - Elsevier
Hepatitis B virus (HBV) is a hepatotropic, partially double-stranded DNA virus that replicates
by reverse transcription and is a major cause of chronic liver disease and hepatocellular …

Accurate fidelity analysis of the reverse transcriptase by a modified next-generation sequencing

H Okano, M Baba, R Hidese, K Iida, T Li… - Enzyme and microbial …, 2018 - Elsevier
We evaluated fidelity of various reverse transcriptases (RTs) by a novel method with
modified next-generation sequencing (NGS). In the optimized condition, one NGS run could …