Allosteric sites: remote control in regulation of protein activity

E Guarnera, IN Berezovsky - Current opinion in structural biology, 2016 - Elsevier
Highlights•Prediction and characterization of allosteric sites.•Protein dynamics is the basis of
allosteric communication.•Theoretical models, experimental verification, and challenges in …

Essential role of conformational selection in ligand binding

AD Vogt, N Pozzi, Z Chen, E Di Cera - Biophysical chemistry, 2014 - Elsevier
Two competing and mutually exclusive mechanisms of ligand recognition–conformational
selection and induced fit–have dominated our interpretation of ligand binding in biological …

Unraveling structural mechanisms of allosteric drug action

R Nussinov, CJ Tsai - Trends in pharmacological sciences, 2014 - cell.com
Orthosteric drugs block the active site to obstruct function; allosteric drugs modify the
population of the active state, to modulate function. Available data lead us to propose that …

Signaling through dynamic linkers as revealed by PKA

M Akimoto, R Selvaratnam… - Proceedings of the …, 2013 - National Acad Sciences
Protein kinase A (PKA) is a prototype of multidomain signaling proteins functioning as
allosteric conformational switches. Allosteric transitions have been the subject of extensive …

[HTML][HTML] Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response

WV Tee, E Guarnera, IN Berezovsky - PLoS computational biology, 2018 - journals.plos.org
The omnipresence of allosteric regulation together with the fundamental role of structural
dynamics in this phenomenon have initiated a great interest to the detection of regulatory …

Allostery through the computational microscope: cAMP activation of a canonical signalling domain

RD Malmstrom, AP Kornev, SS Taylor… - Nature …, 2015 - nature.com
Ligand-induced protein allostery plays a central role in modulating cellular signalling
pathways. Here using the conserved cyclic nucleotide-binding domain of protein kinase A's …

Advances in NMR methods to map allosteric sites: from models to translation

S Boulton, G Melacini - Chemical Reviews, 2016 - ACS Publications
The last five years have witnessed major developments in the understanding of the allosteric
phenomenon, broadly defined as coupling between remote molecular sites. Such advances …

A mechanism for the auto-inhibition of hyperpolarization-activated cyclic nucleotide-gated (HCN) channel opening and its relief by cAMP

M Akimoto, Z Zhang, S Boulton, R Selvaratnam… - Journal of Biological …, 2014 - ASBMB
Hyperpolarization-activated cyclic nucleotide-gated (HCN) ion channels control neuronal
and cardiac electrical rhythmicity. There are four homologous isoforms (HCN1–4) sharing a …

A tool set to map allosteric networks through the NMR chemical shift covariance analysis

S Boulton, M Akimoto, R Selvaratnam, A Bashiri… - Scientific reports, 2014 - nature.com
Allostery is an essential regulatory mechanism of biological function. Allosteric sites are also
pharmacologically relevant as they are often targeted with higher selectivity than orthosteric …

PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination

J Isensee, M Kaufholz, MJ Knape, J Hasenauer… - Journal of Cell …, 2018 - rupress.org
Type II isoforms of cyclic adenosine monophosphate (cAMP)–dependent protein kinase A
(PKA-II) contain a phosphorylatable epitope within the inhibitory domain of RII subunits …