DNA microarrays: a powerful genomic tool for biomedical and clinical research

V Trevino, F Falciani, HA Barrera-Saldaña - Molecular medicine, 2007 - Springer
Among the many benefits of the Human Genome Project are new and powerful tools such as
the genome-wide hybridization devices referred to as microarrays. Initially designed to …

Gene selection and classification of microarray data using random forest

R Díaz-Uriarte, S Alvarez de Andrés - BMC bioinformatics, 2006 - Springer
Background Selection of relevant genes for sample classification is a common task in most
gene expression studies, where researchers try to identify the smallest possible set of genes …

[HTML][HTML] A genomic diagnostic tool for human endometrial receptivity based on the transcriptomic signature

P Díaz-Gimeno, JA Horcajadas, JA Martínez-Conejero… - Fertility and sterility, 2011 - Elsevier
OBJECTIVE: To create a genomic tool composed of a customized microarray and a
bioinformatic predictor for endometrial dating and to detect pathologies of endometrial …

Global Analysis of the Mycobacterium tuberculosis Zur (FurB) Regulon

A Maciag, E Dainese, GM Rodriguez… - Journal of …, 2007 - Am Soc Microbiol
The proteins belonging to the Fur family are global regulators of gene expression involved in
the response to several environmental stresses and to the maintenance of divalent cation …

Global analyses of gene expression in early experimental osteoarthritis

CTG Appleton, V Pitelka, J Henry… - Arthritis & …, 2007 - Wiley Online Library
Objective To analyze genome‐wide changes in chondrocyte gene expression in a surgically
induced model of early osteoarthritis (OA) in rats, to assess the similarity of this model to …

Controlled ovarian stimulation induces a functional genomic delay of the endometrium with potential clinical implications

JA Horcajadas, P Mínguez, J Dopazo… - The Journal of …, 2008 - academic.oup.com
Context: Controlled ovarian stimulation induces morphological, biochemical, and functional
genomic modifications of the human endometrium during the window of implantation …

Babelomics 5.0: functional interpretation for new generations of genomic data

R Alonso, F Salavert, F Garcia-Garcia… - Nucleic acids …, 2015 - academic.oup.com
Babelomics has been running for more than one decade offering a user-friendly interface for
the functional analysis of gene expression and genomic data. Here we present its fifth …

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

F Al-Shahrour, P Minguez, J Tárraga… - Nucleic acids …, 2006 - academic.oup.com
We present a new version of Babelomics, a complete suite of web tools for functional
analysis of genome-scale experiments, with new and improved tools. New functionally …

The ESX-3 Secretion System Is Necessary for Iron and Zinc Homeostasis in Mycobacterium tuberculosis

A Serafini, D Pisu, G Palù, GM Rodriguez… - PloS one, 2013 - journals.plos.org
ESX-3 is one of the five type VII secretion systems encoded by the Mycobacterium
tuberculosis genome. We recently showed the essentiality of ESX-3 for M. tuberculosis …

TiSGeD: a database for tissue-specific genes

SJ Xiao, C Zhang, Q Zou, ZL Ji - Bioinformatics, 2010 - academic.oup.com
The tissue-specific genes are a group of genes whose function and expression are preferred
in one or several tissues/cell types. Identification of these genes helps better understanding …