Genome‐wide association and genomic selection in aquaculture

JM Yanez, A Barria, ME Lopez, T Moen… - Reviews in …, 2023 - Wiley Online Library
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …

Genomic selection: a paradigm shift in animal breeding

T Meuwissen, B Hayes, M Goddard - Animal frontiers, 2016 - academic.oup.com
Traditional marker-assisted selection (MAS) did not result in a widespread use of DNA
information in animal breeding. The main reason was that the traits of interest in livestock …

[HTML][HTML] Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle

G Sahana, Z Cai, MP Sanchez, AC Bouwman… - Journal of Dairy …, 2023 - Elsevier
Genotype data from dairy cattle selection programs have greatly facilitated GWAS to identify
variants related to economic traits. Results can enhance the accuracy of genomic prediction …

Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency …

F Zhang, Y Wang, R Mukiibi, L Chen, M Vinsky… - BMC genomics, 2020 - Springer
Background Genome wide association studies (GWAS) on residual feed intake (RFI) and its
component traits including daily dry matter intake (DMI), average daily gain (ADG), and …

[HTML][HTML] Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction

RF Brøndum, G Su, L Janss, G Sahana… - Journal of dairy …, 2015 - Elsevier
This study investigated the effect on the reliability of genomic prediction when a small
number of significant variants from single marker analysis based on whole genome …

Selecting sequence variants to improve genomic predictions for dairy cattle

PM VanRaden, ME Tooker, JR O'connell… - Genetics Selection …, 2017 - Springer
Background Millions of genetic variants have been identified by population-scale
sequencing projects, but subsets of these variants are needed for routine genomic …

Sequence-vs. chip-assisted genomic selection: accurate biological information is advised

M Pérez-Enciso, JC Rincón, A Legarra - Genetics Selection Evolution, 2015 - Springer
Background The development of next-generation sequencing technologies (NGS) has made
the use of whole-genome sequence data for routine genetic evaluations possible, which has …

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle

R Van Binsbergen, MPL Calus, MCAM Bink… - Genetics Selection …, 2015 - Springer
Background In contrast to currently used single nucleotide polymorphism (SNP) panels, the
use of whole-genome sequence data is expected to enable the direct estimation of the …

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle

MP Sanchez, A Govignon-Gion, P Croiseau… - Genetics Selection …, 2017 - Springer
Background Genome-wide association studies (GWAS) were performed at the sequence
level to identify candidate mutations that affect the expression of six major milk proteins in …

Accelerated deciphering of the genetic architecture of agricultural economic traits in pigs using a low-coverage whole-genome sequencing strategy

R Yang, X Guo, D Zhu, C Tan, C Bian, J Ren… - …, 2021 - academic.oup.com
Background Uncovering the genetic architecture of economic traits in pigs is important for
agricultural breeding. However, high-density haplotype reference panels are unavailable in …