Genome‐wide association and genomic selection in aquaculture
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …
Genomic selection: a paradigm shift in animal breeding
T Meuwissen, B Hayes, M Goddard - Animal frontiers, 2016 - academic.oup.com
Traditional marker-assisted selection (MAS) did not result in a widespread use of DNA
information in animal breeding. The main reason was that the traits of interest in livestock …
information in animal breeding. The main reason was that the traits of interest in livestock …
[HTML][HTML] Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle
Genotype data from dairy cattle selection programs have greatly facilitated GWAS to identify
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency …
Background Genome wide association studies (GWAS) on residual feed intake (RFI) and its
component traits including daily dry matter intake (DMI), average daily gain (ADG), and …
component traits including daily dry matter intake (DMI), average daily gain (ADG), and …
[HTML][HTML] Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction
This study investigated the effect on the reliability of genomic prediction when a small
number of significant variants from single marker analysis based on whole genome …
number of significant variants from single marker analysis based on whole genome …
Selecting sequence variants to improve genomic predictions for dairy cattle
PM VanRaden, ME Tooker, JR O'connell… - Genetics Selection …, 2017 - Springer
Background Millions of genetic variants have been identified by population-scale
sequencing projects, but subsets of these variants are needed for routine genomic …
sequencing projects, but subsets of these variants are needed for routine genomic …
Sequence-vs. chip-assisted genomic selection: accurate biological information is advised
Background The development of next-generation sequencing technologies (NGS) has made
the use of whole-genome sequence data for routine genetic evaluations possible, which has …
the use of whole-genome sequence data for routine genetic evaluations possible, which has …
Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle
R Van Binsbergen, MPL Calus, MCAM Bink… - Genetics Selection …, 2015 - Springer
Background In contrast to currently used single nucleotide polymorphism (SNP) panels, the
use of whole-genome sequence data is expected to enable the direct estimation of the …
use of whole-genome sequence data is expected to enable the direct estimation of the …
Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle
MP Sanchez, A Govignon-Gion, P Croiseau… - Genetics Selection …, 2017 - Springer
Background Genome-wide association studies (GWAS) were performed at the sequence
level to identify candidate mutations that affect the expression of six major milk proteins in …
level to identify candidate mutations that affect the expression of six major milk proteins in …
Accelerated deciphering of the genetic architecture of agricultural economic traits in pigs using a low-coverage whole-genome sequencing strategy
R Yang, X Guo, D Zhu, C Tan, C Bian, J Ren… - …, 2021 - academic.oup.com
Background Uncovering the genetic architecture of economic traits in pigs is important for
agricultural breeding. However, high-density haplotype reference panels are unavailable in …
agricultural breeding. However, high-density haplotype reference panels are unavailable in …