Literature mining for the biologist: from information retrieval to biological discovery

LJ Jensen, J Saric, P Bork - Nature reviews genetics, 2006 - nature.com
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …

Multiple levels of cyclin specificity in cell-cycle control

J Bloom, FR Cross - Nature reviews Molecular cell biology, 2007 - nature.com
Cyclins regulate the cell cycle by binding to and activating cyclin-dependent kinases (Cdks).
Phosphorylation of specific targets by cyclin–Cdk complexes sets in motion different …

[HTML][HTML] An overview of Cdk1-controlled targets and processes

JM Enserink, RD Kolodner - Cell division, 2010 - Springer
The cyclin dependent kinase Cdk1 controls the cell cycle, which is best understood in the
model organism S. cerevisiae. Research performed during the past decade has significantly …

14-3-3 proteins as signaling integration points for cell cycle control and apoptosis

AK Gardino, MB Yaffe - Seminars in cell & developmental biology, 2011 - Elsevier
14-3-3 proteins play critical roles in the regulation of cell fate through phospho-dependent
binding to a large number of intracellular proteins that are targeted by various classes of …

[HTML][HTML] Dynamics of Cdk1 substrate specificity during the cell cycle

M Kõivomägi, E Valk, R Venta, A Iofik, M Lepiku… - Molecular cell, 2011 - cell.com
Cdk specificity is determined by the intrinsic selectivity of the active site and by substrate
docking sites on the cyclin subunit. There is a long-standing debate about the relative …

Morphogenesis and the cell cycle

AS Howell, DJ Lew - Genetics, 2012 - academic.oup.com
Studies of the processes leading to the construction of a bud and its separation from the
mother cell in Saccharomyces cerevisiae have provided foundational paradigms for the …

Cyclin-dependent kinase (CDK) phosphorylation destabilizes somatic Wee1 via multiple pathways

N Watanabe, H Arai, J Iwasaki… - Proceedings of the …, 2005 - National Acad Sciences
At the onset of M phase, the activity of somatic Wee1 (Wee1A), the inhibitory kinase for cyclin-
dependent kinase (CDK), is down-regulated primarily through proteasome-dependent …

[HTML][HTML] Swe1Wee1-dependent tyrosine phosphorylation of Hsp90 regulates distinct facets of chaperone function

M Mollapour, S Tsutsumi, AC Donnelly, K Beebe… - Molecular cell, 2010 - cell.com
Summary Saccharomyces WEE1 (Swe1), the only" true" tyrosine kinase in budding yeast, is
an Hsp90 client protein. Here we show that Swe1 Wee1 phosphorylates a conserved …

Phosphorylation of Hsl1 by Hog1 leads to a G2 arrest essential for cell survival at high osmolarity

J Clotet, X Escoté, MÀ Adrover, G Yaakov, E Garí… - The EMBO …, 2006 - embopress.org
Control of cell cycle progression by stress‐activated protein kinases (SAPKs) is essential for
cell adaptation to extracellular stimuli. Exposure of yeast to osmostress leads to activation of …

Degradation of activated protein kinases by ubiquitination

L Zhimin, H Tony - Annual review of biochemistry, 2009 - annualreviews.org
Protein kinases are important regulators of intracellular signal transduction pathways and
play critical roles in diverse cellular functions. Once a protein kinase is activated, its activity …