Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
An enormous diversity of previously unknown bacteria and archaea has been discovered
recently, yet their functional capacities and distributions in the terrestrial subsurface remain …
recently, yet their functional capacities and distributions in the terrestrial subsurface remain …
DeepSF: deep convolutional neural network for mapping protein sequences to folds
Motivation Protein fold recognition is an important problem in structural bioinformatics.
Almost all traditional fold recognition methods use sequence (homology) comparison to …
Almost all traditional fold recognition methods use sequence (homology) comparison to …
A review of visualisations of protein fold networks and their relationship with sequence and function
J Sykes, BR Holland, MA Charleston - Biological Reviews, 2023 - Wiley Online Library
Proteins form arguably the most significant link between genotype and phenotype.
Understanding the relationship between protein sequence and structure, and applying this …
Understanding the relationship between protein sequence and structure, and applying this …
Exploiting the human peptidome for novel antimicrobial and anticancer agents
Infectious diseases and cancers are leading causes of death and pose major challenges to
public health. The human peptidome encompasses millions of compounds that display an …
public health. The human peptidome encompasses millions of compounds that display an …
Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence
We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas
combining short‐and long‐read sequencing. We obtained a genome assembly totaling …
combining short‐and long‐read sequencing. We obtained a genome assembly totaling …
Groundwater cable bacteria conserve energy by sulfur disproportionation
Cable bacteria of the family Desulfobulbaceae couple spatially separated sulfur oxidation
and oxygen or nitrate reduction by long-distance electron transfer, which can constitute the …
and oxygen or nitrate reduction by long-distance electron transfer, which can constitute the …
FoldRec-C2C: protein fold recognition by combining cluster-to-cluster model and protein similarity network
J Shao, K Yan, B Liu - Briefings in bioinformatics, 2021 - academic.oup.com
As a key for studying the protein structures, protein fold recognition is playing an important
role in predicting the protein structures associated with COVID-19 and other important …
role in predicting the protein structures associated with COVID-19 and other important …
ProtFold-DFG: protein fold recognition by combining Directed Fusion Graph and PageRank algorithm
J Shao, B Liu - Briefings in Bioinformatics, 2021 - academic.oup.com
As one of the most important tasks in protein structure prediction, protein fold recognition has
attracted more and more attention. In this regard, some computational predictors have been …
attracted more and more attention. In this regard, some computational predictors have been …
A chromosome‐level genome assembly enables the identification of the follicule stimulating hormone receptor as the master sex‐determining gene in the flatfish …
R de la Herrán, M Hermida, JA Rubiolo… - Molecular Ecology …, 2023 - Wiley Online Library
Sex determination (SD) shows huge variation among fish and a high evolutionary rate, as
illustrated by the Pleuronectiformes (flatfishes). This order is characterized by its adaptation …
illustrated by the Pleuronectiformes (flatfishes). This order is characterized by its adaptation …
Virulence as a Side Effect of Interspecies Interaction in Vibrio Coral Pathogens
E Rubio-Portillo, AB Martin-Cuadrado… - MBio, 2020 - Am Soc Microbiol
The increase in prevalence and severity of coral disease outbreaks produced by Vibrio
pathogens, and related to global warming, has seriously impacted reef-building corals …
pathogens, and related to global warming, has seriously impacted reef-building corals …