Analysing and interpreting DNA methylation data
C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …
of biological processes and diseases. The technology is now available for studying DNA …
Epigenome-based cancer risk prediction: rationale, opportunities and challenges
M Widschwendter, A Jones, I Evans, D Reisel… - Nature reviews Clinical …, 2018 - nature.com
The incidence of cancer is continuing to rise and risk-tailored early diagnostic and/or primary
prevention strategies are urgently required. The ideal risk-predictive test should: integrate …
prevention strategies are urgently required. The ideal risk-predictive test should: integrate …
DNA methylation arrays as surrogate measures of cell mixture distribution
EA Houseman, WP Accomando, DC Koestler… - BMC …, 2012 - Springer
Background There has been a long-standing need in biomedical research for a method that
quantifies the normally mixed composition of leukocytes beyond what is possible by simple …
quantifies the normally mixed composition of leukocytes beyond what is possible by simple …
Genome-scale analysis of aberrant DNA methylation in colorectal cancer
Colorectal cancer (CRC) is a heterogeneous disease in which unique subtypes are
characterized by distinct genetic and epigenetic alterations. Here we performed …
characterized by distinct genetic and epigenetic alterations. Here we performed …
Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease
CL Relton, G Davey Smith - International journal of …, 2012 - academic.oup.com
The burgeoning interest in the field of epigenetics has precipitated the need to develop
approaches to strengthen causal inference when considering the role of epigenetic …
approaches to strengthen causal inference when considering the role of epigenetic …
A DNA methylation fingerprint of 1628 human samples
AF Fernandez, Y Assenov, JI Martin-Subero… - Genome …, 2012 - genome.cshlp.org
Most of the studies characterizing DNA methylation patterns have been restricted to
particular genomic loci in a limited number of human samples and pathological conditions …
particular genomic loci in a limited number of human samples and pathological conditions …
Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional …
JC Madan, DC Koestler, BA Stanton, L Davidson… - MBio, 2012 - Am Soc Microbiol
Pulmonary damage caused by chronic colonization of the cystic fibrosis (CF) lung by
microbial communities is the proximal cause of respiratory failure. While there has been an …
microbial communities is the proximal cause of respiratory failure. While there has been an …
IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
The Illumina Infinium HumanMethylation450 BeadChip is a newly designed high-density
microarray for quantifying the methylation level of over 450 000 CpG sites within human …
microarray for quantifying the methylation level of over 450 000 CpG sites within human …
Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis
The potential influence of underlying differences in relative leukocyte distributions in studies
involving blood-based profiling of DNA methylation is well recognized and has prompted …
involving blood-based profiling of DNA methylation is well recognized and has prompted …
[HTML][HTML] Ionizing radiation biomarkers for potential use in epidemiological studies
E Pernot, J Hall, S Baatout, MA Benotmane… - … Research/Reviews in …, 2012 - Elsevier
Ionizing radiation is a known human carcinogen that can induce a variety of biological
effects depending on the physical nature, duration, doses and dose-rates of exposure …
effects depending on the physical nature, duration, doses and dose-rates of exposure …