Protein–protein interaction prediction methods: from docking-based to AI-based approaches

Y Tsuchiya, Y Yamamori, K Tomii - Biophysical Reviews, 2022 - Springer
Abstract Protein–protein interactions (PPIs), such as protein–protein inhibitor, antibody–
antigen complex, and supercomplexes play diverse and important roles in cells. Recent …

Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics

YH Li, CY Yu, XX Li, P Zhang, J Tang… - Nucleic acids …, 2018 - academic.oup.com
Extensive efforts have been directed at the discovery, investigation and clinical monitoring of
targeted therapeutics. These efforts may be facilitated by the convenient access of the …

Understanding membrane protein drug targets in computational perspective

J Gong, Y Chen, F Pu, P Sun, F He, L Zhang… - Current Drug …, 2019 - ingentaconnect.com
Membrane proteins play crucial physiological roles in vivo and are the major category of
drug targets for pharmaceuticals. The research on membrane protein is a significant part in …

Transposable elements drive intron gain in diverse eukaryotes

L Gozashti, SW Roy, B Thornlow… - Proceedings of the …, 2022 - National Acad Sciences
There is massive variation in intron numbers across eukaryotic genomes, yet the major
drivers of intron content during evolution remain elusive. Rapid intron loss and gain in some …

Asymmetric interactions between doublesex and tissue- and sex-specific target genes mediate sexual dimorphism in beetles

CC Ledón-Rettig, EE Zattara, AP Moczek - Nature Communications, 2017 - nature.com
Sexual dimorphisms fuel significant intraspecific variation and evolutionary diversification.
Yet the developmental-genetic mechanisms underlying sex-specific development remain …

Web-based drug repurposing tools: a survey

E Sam, P Athri - Briefings in bioinformatics, 2019 - academic.oup.com
Drug repurposing (aka drug repositioning) is the search for new indications or molecular
targets distinct from a drug's putative activity, pharmacological effect or binding specificities …

Biomolecule and bioentity interaction databases in systems biology: a comprehensive review

FA Baltoumas, S Zafeiropoulou, E Karatzas… - Biomolecules, 2021 - mdpi.com
Technological advances in high-throughput techniques have resulted in tremendous growth
of complex biological datasets providing evidence regarding various biomolecular …

Estrogen receptor β is a novel target in acute myeloid leukemia

SG Rota, A Roma, I Dude, C Ma, R Stevens… - Molecular cancer …, 2017 - AACR
Acute myeloid leukemia (AML) is a devastating disease characterized by poor patient
outcome and suboptimal chemotherapeutics. Here, a high-throughput screen identified …

PDID: database of molecular-level putative protein–drug interactions in the structural human proteome

C Wang, G Hu, K Wang, M Brylinski, L Xie… - …, 2016 - academic.oup.com
Motivation: Many drugs interact with numerous proteins besides their intended therapeutic
targets and a substantial portion of these interactions is yet to be elucidated. Protein–Drug …

Molecular docking analysis of curcumin analogues against kinase domain of ALK5

S Kandagalla, BS Sharath, BR Bharath, U Hani… - In Silico …, 2017 - Springer
During metastasis, cancer cells transcend from primary site to normal cells area upon
attaining epithelial to mesenchymal transition (EMT) causing malignant cancer disease …