The promise and challenge of high-throughput sequencing of the antibody repertoire

G Georgiou, GC Ippolito, J Beausang, CE Busse… - Nature …, 2014 - nature.com
Efforts to determine the antibody repertoire encoded by B cells in the blood or lymphoid
organs using high-throughput DNA sequencing technologies have been advancing at an …

Practical guidelines for B-cell receptor repertoire sequencing analysis

G Yaari, SH Kleinstein - Genome medicine, 2015 - Springer
High-throughput sequencing of B-cell immunoglobulin repertoires is increasingly being
applied to gain insights into the adaptive immune response in healthy individuals and in …

Functional antibodies exhibit light chain coherence

DB Jaffe, P Shahi, BA Adams, AM Chrisman… - Nature, 2022 - nature.com
The vertebrate adaptive immune system modifies the genome of individual B cells to encode
antibodies that bind particular antigens. In most mammals, antibodies are composed of …

Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity

MM Corcoran, GE Phad, NV Bernat… - Nature …, 2016 - nature.com
Comprehensive knowledge of immunoglobulin genetics is required to advance our
understanding of B cell biology. Validated immunoglobulin variable (V) gene databases are …

Statistical inference of the generation probability of T-cell receptors from sequence repertoires

A Murugan, T Mora, AM Walczak… - Proceedings of the …, 2012 - National Acad Sciences
Stochastic rearrangement of germline V-, D-, and J-genes to create variable coding
sequence for certain cell surface receptors is at the origin of immune system diversity. This …

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

D Gadala-Maria, G Yaari, M Uduman… - Proceedings of the …, 2015 - National Acad Sciences
Individual variation in germline and expressed B-cell immunoglobulin (Ig) repertoires has
been associated with aging, disease susceptibility, and differential response to infection and …

IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data

A Peres, WD Lees, OL Rodriguez, NY Lee… - Nucleic Acids …, 2023 - academic.oup.com
In adaptive immune receptor repertoire analysis, determining the germline variable (V) allele
associated with each T-and B-cell receptor sequence is a crucial step. This process is highly …

The immunoglobulin heavy chain locus: genetic variation, missing data, and implications for human disease

CT Watson, F Breden - Genes & Immunity, 2012 - nature.com
The immunoglobulin (IG) loci consist of repeated and highly homologous sets of genes of
different types, variable (V), diversity (D) and junction (J), that rearrange in developing B …

Association between a common immunoglobulin heavy chain allele and rheumatic heart disease risk in Oceania

T Parks, MM Mirabel, J Kado, K Auckland… - Nature …, 2017 - nature.com
The indigenous populations of the South Pacific experience a high burden of rheumatic
heart disease (RHD). Here we report a genome-wide association study (GWAS) of RHD …

The individual and population genetics of antibody immunity

CT Watson, J Glanville, WA Marasco - Trends in immunology, 2017 - cell.com
Antibodies (Abs) produced by immunoglobulin (IG) genes are the most diverse proteins
expressed in humans. While part of this diversity is generated by recombination during B …