Species-wide genomics of kākāpō provides tools to accelerate recovery

J Guhlin, MF Le Lec, J Wold, E Koot, D Winter… - Nature ecology & …, 2023 - nature.com
The kākāpō is a critically endangered, intensively managed, long-lived nocturnal parrot
endemic to Aotearoa New Zealand. We generated and analysed whole-genome sequence …

Genomic signatures of inbreeding depression for a threatened Aotearoa New Zealand passerine

L Duntsch, A Whibley, P de Villemereuil… - Molecular …, 2023 - Wiley Online Library
For small and isolated populations, the increased chance of mating between related
individuals can result in a substantial reduction in individual and population fitness. Despite …

Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for the threatened Aotearoa New Zealand hihi

L Duntsch, A Whibley, P Brekke, JG Ewen… - Molecular …, 2021 - Wiley Online Library
Inbreeding can lead to a loss of heterozygosity in a population and when combined with
genetic drift may reduce the adaptive potential of a species. However, there is uncertainty …

Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern

J Wold, KP Koepfli, SJ Galla, D Eccles… - Molecular …, 2021 - Wiley Online Library
Structural variants (SVs) are large rearrangements (> 50 bp) within the genome that impact
gene function and the content and structure of chromosomes. As a result, SVs are a …

Integrating spatial analyses of genomic and physiological data to understand avian responses to environmental change

PM Benham, EJ Beckman - Integrative and Comparative Biology, 2024 - academic.oup.com
Projected rates of climate change over the next century are expected to force species to shift
ranges, adapt or acclimate to evade extinction. Predicting which of these scenarios may be …

The genomic landscapes of desert birds form over multiple time scales

K Provost, SY Shue, M Forcellati… - Molecular biology and …, 2022 - academic.oup.com
Spatial models show that genetic differentiation between populations can be explained by
factors ranging from geographic distance to environmental resistance across the landscape …

[HTML][HTML] Preadapted to adapt: underpinnings of adaptive plasticity revealed by the downy brome genome

SR Revolinski, PJ Maughan, CE Coleman… - Communications …, 2023 - nature.com
Bromus tectorum L. is arguably the most successful invasive weed in the world. It has
fundamentally altered arid ecosystems of the western United States, where it now found on …

Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics

S Bailey, J Guhlin, DS Senanayake… - Molecular Ecology …, 2023 - Wiley Online Library
A high‐quality reference genome can be a valuable resource for threatened species by
providing a foundation to assess their evolutionary potential to adapt to future pressures …

Variation in the genomic basis of parallel phenotypic and ecological divergence in benthic and pelagic morphs of Icelandic Arctic charr (Salvelinus alpinus)

MK Brachmann, K Parsons, S Skúlason… - Molecular …, 2022 - Wiley Online Library
Sympatric adaptive phenotypic divergence should be underlain by genomic differentiation
between subpopulations. When divergence drives similar patterns of phenotypic and …

[HTML][HTML] On the genetic architecture of rapidly adapting and convergent life history traits in guppies

JR Whiting, JR Paris, PJ Parsons, S Matthews… - Heredity, 2022 - nature.com
The genetic basis of traits shapes and constrains how adaptation proceeds in nature; rapid
adaptation can proceed using stores of polygenic standing genetic variation or hard …