Conceptual and empirical bridges between micro-and macroevolution

J Rolland, LF Henao-Diaz, M Doebeli… - Nature Ecology & …, 2023 - nature.com
Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a
unifying framework spanning multiple evolutionary scales. Here we argue that although …

Cysteine-rich secretory proteins (CRISPs) from venomous snakes: An overview of the functional diversity in a large and underappreciated superfamily

T Tadokoro, C M. Modahl, K Maenaka, N Aoki-Shioi - Toxins, 2020 - mdpi.com
The CAP protein superfamily (Cysteine-rich secretory proteins (CRISPs), Antigen 5 (Ag5),
and Pathogenesis-related 1 (PR-1) proteins) is widely distributed, but for toxinologists …

Evaluating the accuracy of methods for detecting correlated rates of molecular and morphological evolution

Y Asar, H Sauquet, SYW Ho - Systematic Biology, 2023 - academic.oup.com
Determining the link between genomic and phenotypic change is a fundamental goal in
evolutionary biology. Insights into this link can be gained by using a phylogenetic approach …

The molecular clock and evolutionary rates across the tree of life

SYW Ho - The molecular evolutionary clock: theory and practice, 2020 - Springer
The molecular evolutionary clock was proposed in the 1960s and has undergone
considerable evolution over the past six decades. After arising from early studies of the …

[图书][B] Phylogenetic trees and molecular evolution: a hands-on introduction with uncertainty quantification corrected

DR Bickel - 2022 - books.google.com
This book serves as a brief introduction to phylogenetic trees and molecular evolution for
biologists and biology students. It does so by presenting the main concepts in a variety of …

Investigating the reliability of molecular estimates of evolutionary time when substitution rates and speciation rates vary

AM Ritchie, X Hua, L Bromham - BMC Ecology and Evolution, 2022 - Springer
Background An accurate timescale of evolutionary history is essential to testing hypotheses
about the influence of historical events and processes, and the timescale for evolution is …

The concept of the modern molecular clock and experience in estimating divergence times of Eulipotyphla and Rodentia

AA Bannikova, VS Lebedev - Biology Bulletin Reviews, 2022 - Springer
Almost 60 years have passed since the degree of DNA difference between two species was
discovered to be a function of the time since their divergence. Later, it became clear that …

The genomic view of diversification

J Marin, G Achaz, A Crombach… - Journal of Evolutionary …, 2020 - academic.oup.com
The process of species diversification is traditionally summarized by a single tree, the
species tree, whose reconstruction from molecular data is hindered by frequent conflicts …

Nucleotide substitutions during speciation may explain substitution rate variation

T Janzen, F Bokma, RS Etienne - Systematic biology, 2022 - academic.oup.com
Although molecular mechanisms associated with the generation of mutations are highly
conserved across taxa, there is widespread variation in mutation rates between evolutionary …

MoTERNN: Classifying the Mode of Cancer Evolution Using Recursive Neural Networks

M Edrisi, HA Ogilvie, M Li, L Nakhleh - RECOMB International Workshop …, 2023 - Springer
With the advent of single-cell DNA sequencing, it is now possible to infer the evolutionary
history of thousands of tumor cells obtained from a single patient. This evolutionary history …