Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

Modern strategies to assess and breed forest tree adaptation to changing climate

AJ Cortés, M Restrepo-Montoya… - Frontiers in Plant …, 2020 - frontiersin.org
Studying the genetics of adaptation to new environments in ecologically and industrially
important tree species is currently a major research line in the fields of plant science and …

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Oaks: an evolutionary success story

A Kremer, AL Hipp - New Phytologist, 2020 - Wiley Online Library
The genus Quercus is among the most widespread and species‐rich tree genera in the
northern hemisphere. The extraordinary species diversity in America and Asia together with …

Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl

DF Morales-Briones, G Kadereit, DT Tefarikis… - Systematic …, 2021 - academic.oup.com
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …

Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection

M Wang, L Zhang, Z Zhang, M Li, D Wang… - New …, 2020 - Wiley Online Library
Phylogenetic analysis is complicated by interspecific gene flow and the presence of shared
ancestral polymorphisms, particularly those maintained by balancing selection. In this study …

A new classification of Carex (Cyperaceae) subgenera supported by a HybSeq backbone phylogenetic tree

T Villaverde, P Jimenez-Mejias… - Botanical Journal of …, 2020 - academic.oup.com
The field of systematics is experiencing a new molecular revolution driven by the increased
availability of high-throughput sequencing technologies. As these techniques become more …

Phylogenomics reveals extreme gene tree discordance in a lineage of dominant trees: hybridization, introgression, and incomplete lineage sorting blur deep …

TGB McLay, RM Fowler, PS Fahey, DJ Murphy… - Molecular Phylogenetics …, 2023 - Elsevier
Eucalypts are a large and ecologically important group of plants on the Australian continent,
and understanding their evolution is important in understanding evolution of the unique …

An Updated Infrageneric Classification of the North American Oaks (Quercus Subgenus Quercus): Review of the Contribution of Phylogenomic Data to Biogeography …

PS Manos, AL Hipp - Forests, 2021 - mdpi.com
The oak flora of North America north of Mexico is both phylogenetically diverse and species-
rich, including 92 species placed in five sections of subgenus Quercus, the oak clade …