Patterns and processes of diploidization in land plants

Z Li, MTW McKibben, GS Finch… - Annual review of …, 2021 - annualreviews.org
Most land plants are now known to be ancient polyploids that have rediploidized.
Diploidization involves many changes in genome organization that ultimately restore …

Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends

M Bétermier, LA Klobutcher, E Orias - Microbiology and Molecular …, 2023 - Am Soc Microbiol
Ciliated protozoa undergo large-scale developmental rearrangement of their somatic
genomes when forming a new transcriptionally active macronucleus during conjugation …

ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology

O Arnaiz, E Meyer, L Sperling - Nucleic acids research, 2020 - academic.oup.com
Abstract ParameciumDB (https://paramecium. i2bc. paris-saclay. fr) is a community model
organism database for the genome and genetics of the ciliate Paramecium. ParameciumDB …

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

D Sellis, F Guérin, O Arnaiz, W Pett, E Lerat… - PLoS …, 2021 - journals.plos.org
Ciliates are unicellular eukaryotes with both a germline genome and a somatic genome in
the same cytoplasm. The somatic macronucleus (MAC), responsible for gene expression, is …

[PDF][PDF] A population-genetic lens into the process of gene loss following whole-genome duplication

P Johri, JF Gout, TG Doak… - Molecular biology and …, 2022 - academic.oup.com
Whole-genome duplications (WGDs) have occurred in many eukaryotic lineages. However,
the underlying evolutionary forces and molecular mechanisms responsible for the long-term …

Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination

A Abello, V Régnier, O Arnaiz, R Le Bars… - PLoS …, 2020 - journals.plos.org
Gene duplication and diversification drive the emergence of novel functions during
evolution. Because of whole genome duplications, ciliates from the Paramecium aurelia …

Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species

N Sawka-Gądek, A Potekhin, DP Singh… - Genome biology and …, 2021 - academic.oup.com
The Paramecium aurelia complex, a group of morphologically similar but sexually
incompatible sibling species, is a unique example of the evolutionary plasticity of mating …

The transient Spt4-Spt5 complex as an upstream regulator of non-coding RNAs during development

D Owsian, J Gruchota, O Arnaiz… - Nucleic acids …, 2022 - academic.oup.com
Abstract The Spt4-Spt5 complex is conserved and essential RNA polymerase elongation
factor. To investigate the role of the Spt4-Spt5 complex in non-coding transcription during …

Characterization of the RNA-interference pathway as a tool for reverse genetic analysis in the nascent phototrophic endosymbiosis, Paramecium bursaria

BH Jenkins, F Maguire, G Leonard… - Royal Society …, 2021 - royalsocietypublishing.org
Endosymbiosis was fundamental for the evolution of eukaryotic complexity. Endosymbiotic
interactions can be dissected through forward-and reverse-genetic experiments, such as …

Fine-Tuning the Expression of Duplicate Genes by Translational Regulation in Arabidopsis and Maize

S Wang, Y Chen - Frontiers in Plant Science, 2019 - frontiersin.org
Plant genomes are extensively shaped by various types of gene duplication. However, in
this active area of investigation, the vast majority of studies focus on the sequence and …