Abundant pleiotropy in human complex diseases and traits
S Sivakumaran, F Agakov, E Theodoratou… - The American Journal of …, 2011 - cell.com
We present a systematic review of pleiotropy among SNPs and genes reported to show
genome-wide association with common complex diseases and traits. We find abundant …
genome-wide association with common complex diseases and traits. We find abundant …
Stability and aggregation of ranked gene lists
AL Boulesteix, M Slawski - Briefings in bioinformatics, 2009 - academic.oup.com
Ranked gene lists are highly instable in the sense that similar measures of differential gene
expression may yield very different rankings, and that a small change of the data set usually …
expression may yield very different rankings, and that a small change of the data set usually …
Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis
PA Reyfman, JM Walter, N Joshi… - American journal of …, 2019 - atsjournals.org
Rationale: The contributions of diverse cell populations in the human lung to pulmonary
fibrosis pathogenesis are poorly understood. Single-cell RNA sequencing can reveal …
fibrosis pathogenesis are poorly understood. Single-cell RNA sequencing can reveal …
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight
INTRODUCTION To date, 559 humans have been flown into space, but long-duration (> 300
days) missions are rare (n= 8 total). Long-duration missions that will take humans to Mars …
days) missions are rare (n= 8 total). Long-duration missions that will take humans to Mars …
[HTML][HTML] scDART-seq reveals distinct m6A signatures and mRNA methylation heterogeneity in single cells
Summary N 6-methyladenosine (m 6 A) is an abundant RNA modification that plays critical
roles in RNA regulation and cellular function. Global m 6 A profiling has revealed important …
roles in RNA regulation and cellular function. Global m 6 A profiling has revealed important …
Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span
AV Misharin, L Morales-Nebreda… - Journal of Experimental …, 2017 - rupress.org
Little is known about the relative importance of monocyte and tissue-resident macrophages
in the development of lung fibrosis. We show that specific genetic deletion of monocyte …
in the development of lung fibrosis. We show that specific genetic deletion of monocyte …
pH-gated succinate secretion regulates muscle remodeling in response to exercise
In response to skeletal muscle contraction during exercise, paracrine factors coordinate
tissue remodeling, which underlies this healthy adaptation. Here we describe a pH-sensing …
tissue remodeling, which underlies this healthy adaptation. Here we describe a pH-sensing …
Host microbiota constantly control maturation and function of microglia in the CNS
D Erny, AL Hrabě de Angelis, D Jaitin… - Nature …, 2015 - nature.com
As the tissue macrophages of the CNS, microglia are critically involved in diseases of the
CNS. However, it remains unknown what controls their maturation and activation under …
CNS. However, it remains unknown what controls their maturation and activation under …
Molecular and genetic properties of tumors associated with local immune cytolytic activity
MS Rooney, SA Shukla, CJ Wu, G Getz, N Hacohen - Cell, 2015 - cell.com
How the genomic landscape of a tumor shapes and is shaped by anti-tumor immunity has
not been systematically explored. Using large-scale genomic data sets of solid tissue tumor …
not been systematically explored. Using large-scale genomic data sets of solid tissue tumor …
[HTML][HTML] A quantitative tissue-specific landscape of protein redox regulation during aging
Mammalian tissues engage in specialized physiology that is regulated through reversible
modification of protein cysteine residues by reactive oxygen species (ROS). ROS regulate a …
modification of protein cysteine residues by reactive oxygen species (ROS). ROS regulate a …