Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

M Zitnik, F Nguyen, B Wang, J Leskovec… - Information …, 2019 - Elsevier
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …

Regulation of coenzyme A levels by degradation: the 'Ins and Outs'

P Naquet, EW Kerr, SD Vickers, R Leonardi - Progress in lipid research, 2020 - Elsevier
Coenzyme A (CoA) is the predominant acyl carrier in mammalian cells and a cofactor that
plays a key role in energy and lipid metabolism. CoA and its thioesters (acyl-CoAs) regulate …

Small-molecule inhibitor of OGG1 suppresses proinflammatory gene expression and inflammation

T Visnes, A Cázares-Körner, W Hao, O Wallner… - Science, 2018 - science.org
The onset of inflammation is associated with reactive oxygen species and oxidative damage
to macromolecules like 7, 8-dihydro-8-oxoguanine (8-oxoG) in DNA. Because 8-oxoguanine …

[HTML][HTML] Biomarkers of nucleic acid oxidation–A summary state-of-the-art

MR Chao, MD Evans, CW Hu, Y Ji, P Møller, P Rossner… - Redox Biology, 2021 - Elsevier
Oxidatively generated damage to DNA has been implicated in the pathogenesis of a wide
variety of diseases. Increasingly, interest is also focusing upon the effects of damage to the …

Massively parallel variant characterization identifies NUDT15 alleles associated with thiopurine toxicity

CC Suiter, T Moriyama, KA Matreyek… - Proceedings of the …, 2020 - National Acad Sciences
As a prototype of genomics-guided precision medicine, individualized thiopurine dosing
based on pharmacogenetics is a highly effective way to mitigate hematopoietic toxicity of this …

[HTML][HTML] Peroxisomal metabolite and cofactor transport in humans

S Chornyi, L IJlst, CWT van Roermund… - Frontiers in cell and …, 2021 - frontiersin.org
Peroxisomes are membrane-bound organelles involved in many metabolic pathways and
essential for human health. They harbor a large number of enzymes involved in the different …

Nucleotide sugars in chemistry and biology

S Mikkola - Molecules, 2020 - mdpi.com
Nucleotide sugars have essential roles in every living creature. They are the building blocks
of the biosynthesis of carbohydrates and their conjugates. They are involved in processes …

Targeting the DNA damage response and repair in cancer through nucleotide metabolism

T Helleday, SG Rudd - Molecular oncology, 2022 - Wiley Online Library
The exploitation of the DNA damage response and DNA repair proficiency of cancer cells is
an important anticancer strategy. The replication and repair of DNA are dependent upon the …

Chromosome 8p engineering reveals increased metastatic potential targetable by patient-specific synthetic lethality in liver cancer

T Huth, EC Dreher, S Lemke, S Fritzsche… - Science …, 2023 - science.org
Large-scale chromosomal aberrations are prevalent in human cancer, but their function
remains poorly understood. We established chromosome-engineered hepatocellular …

[PDF][PDF] Polyphosphate degradation by Nudt3-Zn2+ mediates oxidative stress response

B Samper-Martín, A Sarrias, B Lázaro… - Cell Reports, 2021 - cell.com
Polyphosphate (polyP) is a polymer of hundreds of phosphate residues present in all
organisms. In mammals, polyP is involved in crucial physiological processes, including …