Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed
from a research tool to a clinical application for the diagnosis and management of …
from a research tool to a clinical application for the diagnosis and management of …
PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graph
The use of comparative genomics for functional, evolutionary, and epidemiological studies
requires methods to classify gene families in terms of occurrence in a given species. These …
requires methods to classify gene families in terms of occurrence in a given species. These …
Mycobacterium bovis: From Genotyping to Genome Sequencing
AMS Guimaraes, CK Zimpel - Microorganisms, 2020 - mdpi.com
Mycobacterium bovis is the main pathogen of bovine, zoonotic, and wildlife tuberculosis.
Despite the existence of programs for bovine tuberculosis (bTB) control in many regions, the …
Despite the existence of programs for bovine tuberculosis (bTB) control in many regions, the …
The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples
TH Heupink, L Verboven, A Sharma… - PLoS Computational …, 2023 - journals.plos.org
Background Whole genome sequencing (WGS) holds great potential for the management
and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden …
and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden …
Genome-wide identification of host-segregating epidemiological markers for source attribution in Campylobacter jejuni
Campylobacter is among the most common worldwide causes of bacterial gastroenteritis.
This organism is part of the commensal microbiota of numerous host species, including …
This organism is part of the commensal microbiota of numerous host species, including …
Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics
Background. India is home to 25% of all tuberculosis cases and the second highest number
of multidrug resistant cases worldwide. However, little is known about the genetic diversity …
of multidrug resistant cases worldwide. However, little is known about the genetic diversity …
Genomic and metabolic features of the Bacillus amyloliquefaciens group–B. amyloliquefaciens, B. velezensis, and B. siamensis–revealed by pan-genome analysis
BH Chun, KH Kim, SE Jeong, CO Jeon - Food microbiology, 2019 - Elsevier
The genomic and metabolic features of the Bacillus amyloliquefaciens group comprising B.
amyloliquefaciens, B. velezensis, and B. siamensis were investigated through a pan …
amyloliquefaciens, B. velezensis, and B. siamensis were investigated through a pan …
A complete high-quality MinION nanopore assembly of an extensively drug-resistant Mycobacterium tuberculosis Beijing lineage strain identifies novel variation in …
A Bainomugisa, T Duarte, E Lavu… - Microbial …, 2018 - microbiologyresearch.org
A better understanding of the genomic changes that facilitate the emergence and spread of
drug-resistant Mycobacterium tuberculosis strains is currently required. Here, we report the …
drug-resistant Mycobacterium tuberculosis strains is currently required. Here, we report the …
The open pan-genome architecture and virulence landscape of Mycobacterium bovis
Animal tuberculosis (TB) is an emergent disease caused by Mycobacterium bovis, one of the
animal-adapted ecotypes of the Mycobacterium tuberculosis complex (MTC). In this work …
animal-adapted ecotypes of the Mycobacterium tuberculosis complex (MTC). In this work …
Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains
Mycobacterium bovis causes bovine tuberculosis and is the main organism responsible for
zoonotic tuberculosis in humans. We performed the sequencing, assembly and annotation …
zoonotic tuberculosis in humans. We performed the sequencing, assembly and annotation …