Histone deacetylase inhibitors in clinical studies as templates for new anticancer agents

M Mottamal, S Zheng, TL Huang, G Wang - Molecules, 2015 - mdpi.com
Histone dacetylases (HDACs) are a group of enzymes that remove acetyl groups from
histones and regulate expression of tumor suppressor genes. They are implicated in many …

Molecular dynamics-driven drug discovery: leaping forward with confidence

A Ganesan, ML Coote, K Barakat - Drug discovery today, 2017 - Elsevier
Highlights•Currently, developing a market-approved drug costs a staggering $2.6 billion.•In
silico methods have become an important strategy for narrowing down on promising lead …

The roles of water in the protein matrix: a largely untapped resource for drug discovery

F Spyrakis, MH Ahmed, AS Bayden… - Journal of medicinal …, 2017 - ACS Publications
The value of thoroughly understanding the thermodynamics specific to a drug
discovery/design study is well known. Over the past decade, the crucial roles of water …

Recent progress in histone deacetylase inhibitors as anticancer agents

L Cappellacci, DR Perinelli, F Maggi… - Current medicinal …, 2020 - ingentaconnect.com
Histone Deacetylase (HDAC) inhibitors are a relatively new class of anti-cancer agents that
play important roles in epigenetic or non-epigenetic regulation, inducing death, apoptosis …

Targeting HDAC complexes in asthma and COPD

MRH Zwinderman, S de Weerd, FJ Dekker - Epigenomes, 2019 - mdpi.com
Around three million patients die due to airway inflammatory diseases each year. The most
notable of these diseases are asthma and chronic obstructive pulmonary disease (COPD) …

The prediction of protein–ligand unbinding for modern drug discovery

Q Zhang, N Zhao, X Meng, F Yu, X Yao… - Expert Opinion on Drug …, 2022 - Taylor & Francis
Introduction Drug–target thermodynamic and kinetic information have perennially important
roles in drug design. The prediction of protein–ligand unbinding, which can provide …

How the flexibility of human histone deacetylases influences ligand binding: an overview

N Deschamps, CA Simoes-Pires, PA Carrupt… - Drug Discovery …, 2015 - Elsevier
Highlights•This review covers the flexibility events occurring within the human zinc-
dependent HDACs.•The therapeutic importance of the discovery of new HDAC modulators is …

Potent non-hydroxamate inhibitors of histone deacetylase-8: Role and scope of an isoindolin-2-yl linker with an α-amino amide as the zinc-binding unit

SOR Greenwood, AWE Chan, DF Hansen… - Bioorganic & medicinal …, 2020 - Elsevier
A series of potent inhibitors of histone deacetylase-8 (HDAC8) is described that contains an
α-amino amide zinc-binding unit and a substituted isoindolinyl capping group. The presence …

Mechanisms of histone lysine-modifying enzymes: A computational perspective on the role of the protein environment

WA Cortopassi, K Kumar, F Duarte, AS Pimentel… - Journal of Molecular …, 2016 - Elsevier
Epigenetic pathways are involved in a wide range of diseases, including cancer and
neurological disorders. Specifically, histone modifying and reading processes are the most …

Molecular basis of P450 OleTJE: an investigation of substrate binding mechanism and major pathways

J Du, L Liu, LZ Guo, XJ Yao, JM Yang - Journal of Computer-Aided …, 2017 - Springer
Abstract Cytochrome P450 OleT JE has attracted much attention for its ability to catalyze the
decarboxylation of long chain fatty acids to generate alkenes, which are not only biofuel …