Emerging spintronics phenomena and applications
Development of future sensor, memory, and computing nanodevices based on novel
physical concepts is one of the significant research endeavors in solid-state research. The …
physical concepts is one of the significant research endeavors in solid-state research. The …
SeGraM: A universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping
A critical step of genome sequence analysis is the mapping of sequenced DNA fragments
(ie, reads) collected from an individual to a known linear reference genome sequence (ie …
(ie, reads) collected from an individual to a known linear reference genome sequence (ie …
An FPGA accelerator of the wavefront algorithm for genomics pairwise alignment
In the last years, advances in next-generation sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …
proliferation of genomic applications that guide personalized medicine. These applications …
WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment
In the last years, advances in genome sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …
proliferation of genomic applications that guide personalized medicine. These applications …
Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read mapping
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …
Accelerating genome analysis via algorithm-architecture co-design
High-throughput sequencing (HTS) technologies have revolutionized the field of genomics,
enabling rapid and cost-effective genome analysis for various applications. However, the …
enabling rapid and cost-effective genome analysis for various applications. However, the …
Experimental demonstration of magnetic tunnel junction-based computational random-access memory
The conventional computing paradigm struggles to fulfill the rapidly growing demands from
emerging applications, especially those for machine intelligence because much of the …
emerging applications, especially those for machine intelligence because much of the …
Aligner-d: Leveraging in-dram computing to accelerate dna short read alignment
DNA short read alignment task has become a major sequential bottleneck to humongous
amounts of data generated by next-generation sequencing platforms. In this paper, an …
amounts of data generated by next-generation sequencing platforms. In this paper, an …
Pim-quantifier: A processing-in-memory platform for mrna quantification
Processing-in-memory (PIM) architecture has been considered as a promising solution for
the “memory-wall” issue in many data-intensive applications, especially in bioinformatics …
the “memory-wall” issue in many data-intensive applications, especially in bioinformatics …
Hardware Acceleration of DNA Read Alignment Programs: Challenges and Opportunities
PB Daniel, CA Ricardo, AB Ignacio, PO Miguel - Fractals, 2023 - World Scientific
The alignment or mapping of Deoxyribonucleic Acid (DNA) reads produced by the new
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …