Machines that learn to segment images: a crucial technology for connectomics

V Jain, HS Seung, SC Turaga - Current opinion in neurobiology, 2010 - Elsevier
Connections between neurons can be found by checking whether synapses exist at points
of contact, which in turn are determined by neural shapes. Finding these shapes is a special …

[PDF][PDF] A review on graph based segmentation

KS Camilus, VK Govindan - … Journal of Image, Graphics and Signal …, 2012 - mecs-press.org
Image segmentation plays a crucial role in effective understanding of digital images. Past
few decades saw hundreds of research contributions in this field. However, the research on …

Digital biology approach for macroscale studies of biofilm growth and biocide effects with electron microscopy

KS Kozlov, DA Boiko, EV Detusheva, KV Detushev… - Digital …, 2023 - pubs.rsc.org
Microbial interactions are one of the major topics of current research due to their great
societal relevance. It is now established that biofilms—associations of microorganisms …

Radon-like features and their application to connectomics

R Kumar, A Vázquez-Reina… - 2010 IEEE computer …, 2010 - ieeexplore.ieee.org
In this paper we present a novel class of so-called Radon-Like features, which allow for
aggregation of spatially distributed image statistics into compact feature descriptors. Radon …

A modular hierarchical approach to 3D electron microscopy image segmentation

T Liu, C Jones, M Seyedhosseini, T Tasdizen - Journal of neuroscience …, 2014 - Elsevier
The study of neural circuit reconstruction, ie, connectomics, is a challenging problem in
neuroscience. Automated and semi-automated electron microscopy (EM) image analysis …

An innovative neural network framework to classify blood vessels and tubules based on Haralick features evaluated in histological images of kidney biopsy

V Bevilacqua, N Pietroleonardo, V Triggiani, A Brunetti… - Neurocomputing, 2017 - Elsevier
Abstract Introduction and objective: Computer Aided Diagnosis (CAD) systems based on
Medical Imaging could support physicians in several fields and recently are also applied in …

Neuron segmentation with high-level biological priors

NE Krasowski, T Beier, GW Knott… - IEEE transactions on …, 2017 - ieeexplore.ieee.org
We present a novel approach to the problem of neuron segmentation in image volumes
acquired by an electron microscopy. Existing methods, such as agglomerative or correlation …

Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling

Y Song, W Cai, H Huang, Y Wang, DD Feng… - BMC bioinformatics, 2013 - Springer
Background Segmenting cell nuclei in microscopic images has become one of the most
important routines in modern biological applications. With the vast amount of data, automatic …

Multiscale exploration of mouse brain microstructures using the knife-edge scanning microscope brain atlas

JR Chung, C Sung, D Mayerich, J Kwon… - Frontiers in …, 2011 - frontiersin.org
Connectomics is the study of the full connection matrix of the brain. Recent advances in high-
throughput, high-resolution 3D microscopy methods have enabled the imaging of whole …

Vision and visual servoing for nanomanipulation and nanocharacterization in scanning electron microscope.

N Marturi - 2013 - theses.hal.science
With the latest advances in nanotechnology, it became possible to design novel nanoscale
devices and systems with increasing e ciency. The consequence of this fact is an increase in …