[HTML][HTML] Live-cell imaging in the deep learning era

JW Pylvänäinen, E Gómez-de-Mariscal… - Current Opinion in Cell …, 2023 - Elsevier
Live imaging is a powerful tool, enabling scientists to observe living organisms in real time.
In particular, when combined with fluorescence microscopy, live imaging allows the …

Hyperspectral imaging for clinical applications

J Yoon - BioChip Journal, 2022 - Springer
Measuring morphological and biochemical features of tissue is crucial for disease diagnosis
and surgical guidance, providing clinically significant information related to pathophysiology …

Democratising deep learning for microscopy with ZeroCostDL4Mic

L von Chamier, RF Laine, J Jukkala, C Spahn… - Nature …, 2021 - nature.com
Deep Learning (DL) methods are powerful analytical tools for microscopy and can
outperform conventional image processing pipelines. Despite the enthusiasm and …

Deep self-learning enables fast, high-fidelity isotropic resolution restoration for volumetric fluorescence microscopy

K Ning, B Lu, X Wang, X Zhang, S Nie, T Jiang… - Light: Science & …, 2023 - nature.com
One intrinsic yet critical issue that troubles the field of fluorescence microscopy ever since its
introduction is the unmatched resolution in the lateral and axial directions (ie, resolution …

Isotropic super-resolution light-sheet microscopy of dynamic intracellular structures at subsecond timescales

Y Zhao, M Zhang, W Zhang, Y Zhou, L Chen, Q Liu… - Nature …, 2022 - nature.com
Long-term visualization of the dynamic interactions between intracellular structures
throughout the three-dimensional space of whole live cells is essential to better understand …

Avoiding a replication crisis in deep-learning-based bioimage analysis

RF Laine, I Arganda-Carreras, R Henriques… - Nature …, 2021 - nature.com
Deep learning algorithms are powerful tools for analyzing, restoring and transforming
bioimaging data. One promise of deep learning is parameter-free one-click image analysis …

Imaging of single bacteria with electrochemiluminescence microscopy

Y Zhou, J Dong, P Zhao, J Zhang… - Journal of the …, 2023 - ACS Publications
Rapid and accurate identification of pathogens is crucial for public healthcare and patient
treatment. However, the commonly used analytic tools such as molecular diagnostics and …

Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes

J Chen, H Sasaki, H Lai, Y Su, J Liu, Y Wu… - Nature …, 2021 - nature.com
We demonstrate residual channel attention networks (RCAN) for the restoration and
enhancement of volumetric time-lapse (four-dimensional) fluorescence microscopy data …

Dynamic high-pass filtering and multi-spectral attention for image super-resolution

SA Magid, Y Zhang, D Wei, WD Jang… - Proceedings of the …, 2021 - openaccess.thecvf.com
Deep convolutional neural networks (CNNs) have pushed forward the frontier of super-
resolution (SR) research. However, current CNN models exhibit a major flaw: they are …

Deep learning in electron microscopy

JM Ede - Machine Learning: Science and Technology, 2021 - iopscience.iop.org
Deep learning is transforming most areas of science and technology, including electron
microscopy. This review paper offers a practical perspective aimed at developers with …