The design and analysis of transposon insertion sequencing experiments
Transposon insertion sequencing (TIS) is a powerful approach that can be extensively
applied to the genome-wide definition of loci that are required for bacterial growth under …
applied to the genome-wide definition of loci that are required for bacterial growth under …
DNA-based memory devices for recording cellular events
Measuring biological data across time and space is critical for understanding complex
biological processes and for various biosurveillance applications. However, such data are …
biological processes and for various biosurveillance applications. However, such data are …
[HTML][HTML] Undecaprenyl phosphate translocases confer conditional microbial fitness
The microbial cell wall is essential for maintenance of cell shape and resistance to external
stressors. The primary structural component of the cell wall is peptidoglycan, a glycopolymer …
stressors. The primary structural component of the cell wall is peptidoglycan, a glycopolymer …
Digitally Barcoding Mycobacterium tuberculosis Reveals In Vivo Infection Dynamics in the Macaque Model of Tuberculosis
CJ Martin, AM Cadena, VW Leung, PL Lin, P Maiello… - MBio, 2017 - Am Soc Microbiol
Infection with Mycobacterium tuberculosis causes a spectrum of outcomes; the majority of
individuals contain but do not eliminate the infection, while a small subset present with …
individuals contain but do not eliminate the infection, while a small subset present with …
[HTML][HTML] Exploration of bacterial bottlenecks and Streptococcus pneumoniae pathogenesis by CRISPRi-Seq
Streptococcus pneumoniae is an opportunistic human pathogen that causes invasive
diseases, including pneumonia, with greater health risks upon influenza A virus (IAV) co …
diseases, including pneumonia, with greater health risks upon influenza A virus (IAV) co …
[HTML][HTML] Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine
Host-associated bacterial communities vary extensively between individuals, but it can be
very difficult to determine the sources of this heterogeneity. Here, we demonstrate that …
very difficult to determine the sources of this heterogeneity. Here, we demonstrate that …
Bacterial pathogenesis of plants: future challenges from a microbial perspective: challenges in bacterial molecular plant pathology
S Pfeilmeier, DL Caly, JG Malone - Molecular plant pathology, 2016 - Wiley Online Library
Summary Future Challenges in Plant Pathology Plant infection is a complicated process. On
encountering a plant, pathogenic microorganisms must first adapt to life on the epiphytic …
encountering a plant, pathogenic microorganisms must first adapt to life on the epiphytic …
[HTML][HTML] Analysis of bottlenecks in experimental models of infection
S Abel, P Abel zur Wiesch, BM Davis… - PLoS …, 2015 - journals.plos.org
The metaphor of a bottleneck has been used in a variety of fields to describe the critical
constraints that limit a system's performance or capacity. In biology, particularly in studies of …
constraints that limit a system's performance or capacity. In biology, particularly in studies of …
Genetic analysis of Vibrio parahaemolyticus intestinal colonization
TP Hubbard, MC Chao, S Abel… - Proceedings of the …, 2016 - National Acad Sciences
Vibrio parahaemolyticus is the most common cause of seafood-borne gastroenteritis
worldwide and a blight on global aquaculture. This organism requires a horizontally …
worldwide and a blight on global aquaculture. This organism requires a horizontally …
[HTML][HTML] Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota
DNA-amplicon-based microbiota profiling can estimate species diversity and abundance but
cannot resolve genetic differences within individuals of the same species. Here we report …
cannot resolve genetic differences within individuals of the same species. Here we report …