The design and analysis of transposon insertion sequencing experiments

MC Chao, S Abel, BM Davis, MK Waldor - Nature Reviews Microbiology, 2016 - nature.com
Transposon insertion sequencing (TIS) is a powerful approach that can be extensively
applied to the genome-wide definition of loci that are required for bacterial growth under …

DNA-based memory devices for recording cellular events

RU Sheth, HH Wang - Nature Reviews Genetics, 2018 - nature.com
Measuring biological data across time and space is critical for understanding complex
biological processes and for various biosurveillance applications. However, such data are …

[HTML][HTML] Undecaprenyl phosphate translocases confer conditional microbial fitness

B Sit, V Srisuknimit, E Bueno, FG Zingl, K Hullahalli… - Nature, 2023 - nature.com
The microbial cell wall is essential for maintenance of cell shape and resistance to external
stressors. The primary structural component of the cell wall is peptidoglycan, a glycopolymer …

Digitally Barcoding Mycobacterium tuberculosis Reveals In Vivo Infection Dynamics in the Macaque Model of Tuberculosis

CJ Martin, AM Cadena, VW Leung, PL Lin, P Maiello… - MBio, 2017 - Am Soc Microbiol
Infection with Mycobacterium tuberculosis causes a spectrum of outcomes; the majority of
individuals contain but do not eliminate the infection, while a small subset present with …

[HTML][HTML] Exploration of bacterial bottlenecks and Streptococcus pneumoniae pathogenesis by CRISPRi-Seq

X Liu, JM Kimmey, L Matarazzo, V de Bakker… - Cell Host & Microbe, 2021 - cell.com
Streptococcus pneumoniae is an opportunistic human pathogen that causes invasive
diseases, including pneumonia, with greater health risks upon influenza A virus (IAV) co …

[HTML][HTML] Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine

NM Vega, J Gore - PLoS Biology, 2017 - journals.plos.org
Host-associated bacterial communities vary extensively between individuals, but it can be
very difficult to determine the sources of this heterogeneity. Here, we demonstrate that …

Bacterial pathogenesis of plants: future challenges from a microbial perspective: challenges in bacterial molecular plant pathology

S Pfeilmeier, DL Caly, JG Malone - Molecular plant pathology, 2016 - Wiley Online Library
Summary Future Challenges in Plant Pathology Plant infection is a complicated process. On
encountering a plant, pathogenic microorganisms must first adapt to life on the epiphytic …

[HTML][HTML] Analysis of bottlenecks in experimental models of infection

S Abel, P Abel zur Wiesch, BM Davis… - PLoS …, 2015 - journals.plos.org
The metaphor of a bottleneck has been used in a variety of fields to describe the critical
constraints that limit a system's performance or capacity. In biology, particularly in studies of …

Genetic analysis of Vibrio parahaemolyticus intestinal colonization

TP Hubbard, MC Chao, S Abel… - Proceedings of the …, 2016 - National Acad Sciences
Vibrio parahaemolyticus is the most common cause of seafood-borne gastroenteritis
worldwide and a blight on global aquaculture. This organism requires a horizontally …

[HTML][HTML] Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota

J Ordon, J Thouin, RT Nakano, KW Ma, P Zhang… - Nature …, 2024 - nature.com
DNA-amplicon-based microbiota profiling can estimate species diversity and abundance but
cannot resolve genetic differences within individuals of the same species. Here we report …