Current challenges and best-practice protocols for microbiome analysis
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …
sequencing techniques has significantly enhanced our understanding on metabolic …
Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Abstract The National Institute of Allergy and Infectious Diseases (NIAID) established the
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Clinical detection and characterization of bacterial pathogens in the genomics era
PE Fournier, G Dubourg, D Raoult - Genome medicine, 2014 - Springer
The availability of genome sequences obtained using next-generation sequencing (NGS)
has revolutionized the field of infectious diseases. Indeed, more than 38,000 bacterial and …
has revolutionized the field of infectious diseases. Indeed, more than 38,000 bacterial and …
The ontology for biomedical investigations
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with
precisely defined meanings to describe all aspects of how investigations in the biological …
precisely defined meanings to describe all aspects of how investigations in the biological …
Finding our way through phenotypes
Despite a large and multifaceted effort to understand the vast landscape of phenotypic data,
their current form inhibits productive data analysis. The lack of a community-wide …
their current form inhibits productive data analysis. The lack of a community-wide …
Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology
Genome-wide association studies (GWASs) have become an increasingly important
approach for eukaryotic geneticists, facilitating the identification of hundreds of genetic …
approach for eukaryotic geneticists, facilitating the identification of hundreds of genetic …
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
Abstract Background The Public Health Alliance for Genomic Epidemiology
(PHA4GE)(https://pha4ge. org) is a global coalition that is actively working to establish …
(PHA4GE)(https://pha4ge. org) is a global coalition that is actively working to establish …
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
Ontologies are critical to data/metadata and knowledge standardization, sharing, and
analysis. With hundreds of biological and biomedical ontologies developed, it has become …
analysis. With hundreds of biological and biomedical ontologies developed, it has become …
Navigating the Landscape: A Comprehensive Review of Current Virus Databases
M Ritsch, NA Cassman, S Saghaei, M Marz - Viruses, 2023 - mdpi.com
Viruses are abundant and diverse entities that have important roles in public health,
ecology, and agriculture. The identification and surveillance of viruses rely on an …
ecology, and agriculture. The identification and surveillance of viruses rely on an …
Integrating advanced molecular technologies into public health
M Gwinn, DR MacCannell… - Journal of clinical …, 2017 - Am Soc Microbiol
Advances in laboratory and information technologies are transforming public health
microbiology. High-throughput genome sequencing and bioinformatics are enhancing our …
microbiology. High-throughput genome sequencing and bioinformatics are enhancing our …