Diverse and unified mechanisms of transcription initiation in bacteria
Transcription of DNA is a fundamental process in all cellular organisms. The enzyme
responsible for transcription, RNA polymerase, is conserved in general architecture and …
responsible for transcription, RNA polymerase, is conserved in general architecture and …
Mechanisms of transcriptional pausing in bacteria
JY Kang, TV Mishanina, R Landick, SA Darst - Journal of molecular biology, 2019 - Elsevier
Pausing by RNA polymerase (RNAP) during transcription regulates gene expression in all
domains of life. In this review, we recap the history of transcriptional pausing discovery …
domains of life. In this review, we recap the history of transcriptional pausing discovery …
DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning
Single-molecule Förster Resonance energy transfer (smFRET) is an adaptable method for
studying the structure and dynamics of biomolecules. The development of high throughput …
studying the structure and dynamics of biomolecules. The development of high throughput …
Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase
SB Jensen, S Thodberg, S Parween, ME Moses… - Nature …, 2021 - nature.com
Metabolic control is mediated by the dynamic assemblies and function of multiple redox
enzymes. A key element in these assemblies, the P450 oxidoreductase (POR), donates …
enzymes. A key element in these assemblies, the P450 oxidoreductase (POR), donates …
Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase
RNA polymerases (RNAPs) carry out the first step in the central dogma of molecular biology
by transcribing DNA into RNA. Despite their importance, much about how RNAPs work …
by transcribing DNA into RNA. Despite their importance, much about how RNAPs work …
[HTML][HTML] Mechanisms of σ54-dependent transcription initiation and regulation
Cellular RNA polymerase is a multi-subunit macromolecular assembly responsible for gene
transcription, a highly regulated process conserved from bacteria to humans. In bacteria …
transcription, a highly regulated process conserved from bacteria to humans. In bacteria …
[HTML][HTML] Recent advances in understanding σ70-dependent transcription initiation mechanisms
A Mazumder, AN Kapanidis - Journal of molecular biology, 2019 - Elsevier
Prokaryotic transcription is one of the most studied biological systems, with relevance to
many fields including the development and use of antibiotics, the construction of synthetic …
many fields including the development and use of antibiotics, the construction of synthetic …
CarD and RbpA modify the kinetics of initial transcription and slow promoter escape of the Mycobacterium tuberculosis RNA polymerase
D Jensen, AR Manzano, J Rammohan… - Nucleic Acids …, 2019 - academic.oup.com
Abstract The pathogen Mycobacterium tuberculosis (Mtb), the causative agent of
tuberculosis, enacts unique transcriptional regulatory mechanisms when subjected to host …
tuberculosis, enacts unique transcriptional regulatory mechanisms when subjected to host …
Can DyeCycling break the photobleaching limit in single-molecule FRET?
B Vermeer, S Schmid - Nano Research, 2022 - Springer
Biomolecular systems, such as proteins, crucially rely on dynamic processes at the
nanoscale. Detecting biomolecular nanodynamics is therefore key to obtaining a …
nanoscale. Detecting biomolecular nanodynamics is therefore key to obtaining a …
Structural basis of ECF-σ-factor-dependent transcription initiation
Extracytoplasmic (ECF) σ factors, the largest class of alternative σ factors, are related to
primary σ factors, but have simpler structures, comprising only two of six conserved …
primary σ factors, but have simpler structures, comprising only two of six conserved …