Animal personality and state–behaviour feedbacks: a review and guide for empiricists

A Sih, KJ Mathot, M Moiron, PO Montiglio… - Trends in ecology & …, 2015 - cell.com
An exciting area in behavioural ecology focuses on understanding why animals exhibit
consistent among-individual differences in behaviour (animal personalities). Animal …

Models for navigating biological complexity in breeding improved crop plants

G Hammer, M Cooper, F Tardieu, S Welch, B Walsh… - Trends in plant …, 2006 - cell.com
Progress in breeding higher-yielding crop plants would be greatly accelerated if the
phenotypic consequences of making changes to the genetic makeup of an organism could …

MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package

JD Hadfield - Journal of statistical software, 2010 - jstatsoft.org
Generalized linear mixed models provide a flexible framework for modeling a range of data,
although with non-Gaussian response variables the likelihood cannot be obtained in closed …

Genomic prediction of breeding values when modeling genotype× environment interaction using pedigree and dense molecular markers

J Burgueño, G de los Campos, K Weigel… - Crop Science, 2012 - Wiley Online Library
Genomic selection (GS) has become an important aid in plant and animal breeding.
Multienvironment (multitrait) models allow borrowing of information across environments …

Genomic-assisted prediction of genetic value with semiparametric procedures

D Gianola, RL Fernando, A Stella - Genetics, 2006 - academic.oup.com
Semiparametric procedures for prediction of total genetic value for quantitative traits, which
make use of phenotypic and genomic data simultaneously, are presented. The methods …

Host genome influence on gut microbial composition and microbial prediction of complex traits in pigs

A Camarinha-Silva, M Maushammer, R Wellmann… - Genetics, 2017 - academic.oup.com
The aim of the present study was to analyze the interplay between gastrointestinal tract (GIT)
microbiota, host genetics, and complex traits in pigs using extended quantitative-genetic …

[PDF][PDF] MCMCglmm course notes

J Hadfield - available at: cran. r-project. org/web/packages …, 2014 - jcsantosresearch.org
These are (incomplete) course notes about generalised linear mixed models (GLMM).
Special emphasis is placed on understanding the underlying structure of a GLMM in order to …

Selection response and genetic parameters for residual feed intake in Yorkshire swine

W Cai, DS Casey, JCM Dekkers - Journal of animal science, 2008 - academic.oup.com
Residual feed intake (RFI) is a measure of feed efficiency defined as the difference between
the observed feed intake and that predicted from the average requirements for growth and …

[HTML][HTML] Invited review: Genetics and claw health: Opportunities to enhance claw health by genetic selection

B Heringstad, C Egger-Danner, N Charfeddine… - Journal of dairy …, 2018 - Elsevier
Routine recording of claw health status at claw trimming of dairy cattle has been established
in several countries, providing valuable data for genetic evaluation. In this review, we …

Multitrait index based on factor analysis and ideotype‐design: Proposal and application on elephant grass breeding for bioenergy

JRASC Rocha, JC Machado, PCS Carneiro - Gcb Bioenergy, 2018 - Wiley Online Library
This study proposes a new multitrait index based on factor analysis and ideotype‐design
(FAI‐BLUP index), and validates its potential on the selection of elephant grass genotypes …