The 2019 mathematical oncology roadmap

RC Rockne, A Hawkins-Daarud, KR Swanson… - Physical …, 2019 - iopscience.iop.org
Whether the nom de guerre is Mathematical Oncology, Computational or Systems Biology,
Theoretical Biology, Evolutionary Oncology, Bioinformatics, or simply Basic Science, there is …

[HTML][HTML] Combined mechanistic modeling and machine-learning approaches in systems biology–A systematic literature review

A Procopio, G Cesarelli, L Donisi, A Merola… - Computer methods and …, 2023 - Elsevier
Background and objective Mechanistic-based Model simulations (MM) are an effective
approach commonly employed, for research and learning purposes, to better investigate …

[HTML][HTML] Cancer modeling: From mechanistic to data-driven approaches, and from fundamental insights to clinical applications

S Bekisz, L Geris - Journal of Computational Science, 2020 - Elsevier
Cancer is still one of the major causes of death worldwide. Even if its comprehension is
improving continuously, the complexity and heterogeneity of this group of diseases …

An overview of mathematical modelling in cancer research: fractional calculus as modelling tool

LC Vieira, RS Costa, D Valério - Fractal and Fractional, 2023 - mdpi.com
Cancer is a complex disease, responsible for a significant portion of global deaths. The
increasing prioritisation of know-why over know-how approaches in biological research has …

Agent‐based modeling in molecular systems biology

M Soheilypour, MRK Mofrad - BioEssays, 2018 - Wiley Online Library
Molecular systems orchestrating the biology of the cell typically involve a complex web of
interactions among various components and span a vast range of spatial and temporal …

Modeling heterogeneous tumor growth dynamics and cell–cell interactions at single-cell and cell-population resolution

LA Harris, S Beik, PMM Ozawa, L Jimenez… - Current opinion in …, 2019 - Elsevier
Cancer is a complex, dynamic disease that despite recent advances remains mostly
incurable. Intertumoral and intratumoral heterogeneities are generally considered major …

Genome-scale metabolic networks in time and space

O Øyås, J Stelling - Current Opinion in Systems Biology, 2018 - Elsevier
Constraint-based models (CBMs) are key tools for elucidating the behavior of genome-scale
metabolic networks, but the assumption of steady state hinders their application to …

Multiscale computational models of cancer

HV Warner, N Sivakumar, SM Peirce… - Current Opinion in …, 2019 - Elsevier
Cancer is an inherently multiscale process, wherein genetic lesions at the sub-nuclear level
propagate to changes in intracellular biochemistry, cell-level behaviors, and ultimately to …

Metabolic symbiosis between oxygenated and hypoxic tumour cells: An agent-based modelling study

PG Jayathilake, P Victori, CE Pavillet… - PLOS Computational …, 2024 - journals.plos.org
Deregulated metabolism is one of the hallmarks of cancer. It is well-known that tumour cells
tend to metabolize glucose via glycolysis even when oxygen is available and mitochondrial …

[HTML][HTML] Agent-based approaches for biological modeling in oncology: A literature review

S Stephan, S Galland, OL Narsis, K Shoji… - Artificial Intelligence in …, 2024 - Elsevier
Context: Computational modeling involves the use of computer simulations and models to
study and understand real-world phenomena. Its application is particularly relevant in the …