Modeling of the electrostatic interaction and catalytic activity of [NiFe] hydrogenases on a planar electrode

MA Ruiz-Rodríguez, CD Cooper… - The Journal of …, 2022 - ACS Publications
Hydrogenases are a group of enzymes that have caught the interest of researchers in
renewable energies, due to their ability to catalyze the redox reaction of hydrogen. The …

Effective electrostatic interactions between two overall neutral surfaces with quenched charge heterogeneity over atomic length scale

S Zhou - Journal of Statistical Physics, 2017 - Springer
Abstract Using Monte Carlo results as a reference, a classical density functional theory
(CDFT) is shown to reliably predict the forces between two heterogeneously charged …

Predicting the orientation of adsorbed proteins steered with electric fields using a simple electrostatic model

SA Urzúa, PY Sauceda-Oloño, CD García… - The Journal of …, 2022 - ACS Publications
Under the most common experimental conditions, the adsorption of proteins to solid
surfaces is a spontaneous process that leads to a rather compact layer of randomly oriented …

Accurate Boundary Integral Formulations for the Calculation of Electrostatic Forces with an Implicit-Solvent Model

I Addison-Smith, HV Guzman… - Journal of Chemical …, 2023 - ACS Publications
An accurate force calculation with the Poisson–Boltzmann equation is challenging, as it
requires the electric field on the molecular surface. Here we present a calculation of the …

A New Computer Model for Evaluating the Selective Binding Affinity of Phenylalkylamines to T-Type Ca2+ Channels

Y Lu, M Li - Pharmaceuticals, 2021 - mdpi.com
To establish a computer model for evaluating the binding affinity of phenylalkylamines
(PAAs) to T-type Ca2+ channels (TCCs), we created new homology models for both TCCs …

Pythonic geodynamics

G Morra - Lecture Notes in Earth System Sciences, ISBN, 2018 - Springer
Adults, like children, learn by playing. With this insight in mind, I wrote this book as a non-
exhaustive and non-overambitius text that aims at introducing computational geodynamics …

PB‐AM: An open‐source, fully analytical linear Poisson‐Boltzmann solver

LE Felberg, DH Brookes, EH Yap… - Journal of …, 2017 - Wiley Online Library
We present the open source distributed software package Poisson‐Boltzmann Analytical
Method (PB‐AM), a fully analytical solution to the linearized PB equation, for molecules …

Computational nanoplasmonics in the quasistatic limit for biosensing applications

NC Clementi, CD Cooper, LA Barba - Physical Review E, 2019 - APS
The phenomenon of localized surface plasmon resonance (LSPR) provides high sensitivity
in detecting biomolecules through shifts in resonance frequency when a target is present …

Hematite Nanoparticle-Modified Carbon Paper as a Promising Electrochemical Sensor for Atropine Detection in Beverages

A Cabezas, S Aguilera, SA Urzúa, CD Cooper, C Vera… - 2024 - chemrxiv.org
This study describes the electroanalytical determination of atropine in beverages using a
carbon paper (CP) electrode modified with Fe2O3 nanostructures. The incorporation of …

Association equilibrium model. I. Influence of pH and salt concentration on ion-exchanger

L Chen, J Yun, H Zhang, B Dai - Journal of Chromatography A, 2019 - Elsevier
An association equilibrium model is presented in this work to illustrate the charged state of
an ion-exchange adsorbent in electrolytic solution. This semi-empirical model considers the …