Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

[HTML][HTML] Genomic selection for forest tree improvement: Methods, achievements and perspectives

VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …

[HTML][HTML] A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

JA Chapman, M Mascher, A Buluç, K Barry… - Genome biology, 2015 - Springer
Polyploid species have long been thought to be recalcitrant to whole-genome assembly. By
combining high-throughput sequencing, recent developments in parallel computing, and …

Insights into conifer giga-genomes

AR De La Torre, I Birol, J Bousquet… - Plant …, 2014 - academic.oup.com
Insights from sequenced genomes of major land plant lineages have advanced research in
almost every aspect of plant biology. Until recently, however, assembled genome …

[HTML][HTML] Forest tree genomics: 10 achievements from the past 10 years and future prospects

C Plomion, C Bastien, MB Bogeat-Triboulot… - Annals of Forest …, 2016 - Springer
Key message This review highlights some of the discoveries and applications made
possible by “omics” technologies over the last 10 years and provides perspectives for …

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms

C Gasc, E Peyretaillade, P Peyret - Nucleic Acids Research, 2016 - academic.oup.com
The recent expansion of next-generation sequencing has significantly improved biological
research. Nevertheless, deep exploration of genomes or metagenomic samples remains …

[HTML][HTML] Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance

Y Yang, S Bocs, H Fan, A Armero, L Baudouin… - Communications …, 2021 - nature.com
Coconut (Cocos nucifera) is the emblematic palm of tropical coastal areas all around the
globe. It provides vital resources to millions of farmers. In an effort to better understand its …

Status and perspectives of genomic selection in forest tree breeding

D Grattapaglia - Genomic selection for crop improvement: New …, 2017 - Springer
Trees have long life cycles and become reproductively active only after several years. The
progress of tree breeding programs is therefore strongly dependent on the time needed to …

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

J Prunier, JP Verta, JJ MacKay - New Phytologist, 2016 - Wiley Online Library
Conifers have been understudied at the genomic level despite their worldwide ecological
and economic importance but the situation is rapidly changing with the development of next …

High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species

S Sakaguchi, T Sugino, Y Tsumura, M Ito… - Tree Genetics & …, 2015 - Springer
White cypress pine (Callitris glaucophylla) is a drought-tolerant evergreen conifer, which is a
member of the Australian C. columellaris species complex. The complex is comprised of five …