Web scraping technologies in an API world

D Glez-Peña, A Lourenço… - Briefings in …, 2014 - academic.oup.com
Web services are the de facto standard in biomedical data integration. However, there are
data integration scenarios that cannot be fully covered by Web services. A number of Web …

Unipro UGENE: a unified bioinformatics toolkit

K Okonechnikov, O Golosova, M Fursov… - …, 2012 - academic.oup.com
Unipro UGENE is a multiplatform open-source software with the main goal of assisting
molecular biologists without much expertise in bioinformatics to manage, analyze and …

myExperiment: a repository and social network for the sharing of bioinformatics workflows

CA Goble, J Bhagat, S Aleksejevs… - Nucleic acids …, 2010 - academic.oup.com
Abstract myExperiment (http://www. myexperiment. org) is an online research environment
that supports the social sharing of bioinformatics workflows. These workflows are …

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows

T Katayama, K Arakawa, M Nakao, K Ono… - Journal of biomedical …, 2010 - Springer
Web services have become a key technology for bioinformatics, since life science databases
are globally decentralized and the exponential increase in the amount of available data …

Modeling, tracking and interactive animation of faces and heads//using input from video

I Essa, S Basu, T Darrell… - … Computer Animation'96, 1996 - ieeexplore.ieee.org
We describe tools that use measurements from video for the extraction of facial modeling
and animation parameters, head tracking, and real time interactive facial animation. These …

Interoperable and scalable data analysis with microservices: applications in metabolomics

P Emami Khoonsari, P Moreno, S Bergmann… - …, 2019 - academic.oup.com
Motivation Developing a robust and performant data analysis workflow that integrates all
necessary components whilst still being able to scale over multiple compute nodes is a …

XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services

J Wagener, O Spjuth, EL Willighagen, JES Wikberg - BMC bioinformatics, 2009 - Springer
Background Life sciences make heavily use of the web for both data provision and analysis.
However, the increasing amount of available data and the diversity of analysis tools call for …

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

T Katayama, M Nakao, T Takagi - Nucleic acids research, 2010 - academic.oup.com
Web services have become widely used in bioinformatics analysis, but there exist
incompatibilities in interfaces and data types, which prevent users from making full use of a …

A quick guide to large-scale genomic data mining

C Huttenhower, O Hofmann - PLoS computational biology, 2010 - journals.plos.org
For the first several hundred years of research in cellular biology, the main bottleneck to
scientific progress was data collection. Our newfound data-richness, however, has shifted …

The EMBRACE web service collection

S Pettifer, J Ison, M Kalaš, D Thorne… - Nucleic acids …, 2010 - academic.oup.com
Abstract The EMBRACE (European Model for Bioinformatics Research and Community
Education) web service collection is the culmination of a 5-year project that set out to …