The evolutionary demography of duplicate genes

M Lynch, JS Conery - Genome evolution: gene and genome duplications …, 2003 - Springer
Although gene duplication has generally been viewed as a necessary source of material for
the origin of evolutionary novelties, the rates of origin, loss, and preservation of gene …

Computational approaches to unveiling ancient genome duplications

YV de Peer - Nature Reviews Genetics, 2004 - nature.com
Recent analyses of complete genome sequences have revealed that many genomes have
been duplicated in their evolutionary past. Such events have been associated with important …

Preferential duplication of conserved proteins in eukaryotic genomes

JC Davis, DA Petrov - PLoS biology, 2004 - journals.plos.org
A central goal in genome biology is to understand the origin and maintenance of genic
diversity. Over evolutionary time, each gene's contribution to the genic content of an …

Genome-wide identification and expression pattern analysis of the KCS gene family in barley

T Tong, Y Fang, Z Zhang, J Zheng, X Zhang, J Li… - Plant Growth …, 2021 - Springer
Abstract β-Ketoacyl CoA synthetase (KCS) is a key rate-limiting enzyme for the synthesis of
very-long-chain fatty acids (VLCFAs) in plants that determines the synthesis rate and carbon …

C-type lectin-like domains in Fugu rubripes

AN Zelensky, JE Gready - BMC genomics, 2004 - Springer
Background Members of the C-type lectin domain (CTLD) superfamily are metazoan
proteins functionally important in glycoprotein metabolism, mechanisms of multicellular …

Genome-Wide Identification of Bilberry WRKY Transcription Factors: Go Wild and Duplicate

W Felipez, J Villavicencio, VO Nizolli, C Pegoraro… - Plants, 2023 - mdpi.com
WRKY transcription factor genes compose an important family of transcriptional regulators
that are present in several plant species. According to previous studies, these genes can …

Investigating ancient duplication events in the Arabidopsis genome

J Raes, K Vandepoele, C Simillion, Y Saeys… - Journal of Structural and …, 2003 - Springer
The complete genomic analysis of Arabidopsis thaliana has shown that a major fraction of
the genome consists of paralogous genes that probably originated through one or more …

Origins and impact of constraints in evolution of gene families

BE Shakhnovich, EV Koonin - Genome research, 2006 - genome.cshlp.org
Recent investigations of high-throughput genomic and phenomic data have uncovered a
variety of significant but relatively weak correlations between a gene's functional and …

Protein Evolution in the Context of Drosophila Development

JC Davis, O Brandman, DA Petrov - Journal of molecular evolution, 2005 - Springer
The tempo at which a protein evolves depends not only on the rate at which mutations arise
but also on the selective effects that those mutations have at the organismal level. It is …

X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis

ND Singh, JC Davis, DA Petrov - Genetics, 2005 - academic.oup.com
Comparing patterns of molecular evolution between autosomes and sex chromosomes
(such as X and W chromosomes) can provide insight into the forces underlying genome …