Programmed genome rearrangements in ciliates

I Rzeszutek, XX Maurer-Alcalá, M Nowacki - Cellular and Molecular Life …, 2020 - Springer
Ciliates are a highly divergent group of unicellular eukaryotes with separate somatic and
germline genomes found in distinct dimorphic nuclei. This characteristic feature is tightly …

Microbial diversity in the eukaryotic SAR clade: illuminating the darkness between morphology and molecular data

JD Grattepanche, LM Walker, BM Ott… - …, 2018 - Wiley Online Library
Despite their diversity and ecological importance, many areas of the SAR—Stramenopila,
Alveolata, and Rhizaria—clade are poorly understood as the majority (90%) of SAR species …

Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors

X Chen, Y Jiang, F Gao, W Zheng… - Molecular ecology …, 2019 - Wiley Online Library
As a model organism for studies of cell and environmental biology, the free‐living and
cosmopolitan ciliate Euplotes vannus shows intriguing features like dual genome …

Single-cell transcriptomics reveal a correlation between genome architecture and gene family evolution in ciliates

Y Yan, XX Maurer-Alcalá, R Knight… - MBio, 2019 - Am Soc Microbiol
Ciliates, a eukaryotic clade that is over 1 billion years old, are defined by division of genome
function between transcriptionally inactive germline micronuclei and functional somatic …

iGDP: An integrated genome decontamination pipeline for wild ciliated microeukaryotes

C Jiang, G Wang, J Zhang, S Gu… - Molecular Ecology …, 2023 - Wiley Online Library
Ciliates are a large group of ubiquitous and highly diverse single‐celled eukaryotes that
play an essential role in the functioning of microbial food webs. However, their genomic …

Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order …

M Ma, Y Li, XX Maurer-Alcalá, Y Wang, Y Yan - Molecular Phylogenetics …, 2022 - Elsevier
The class Karyorelictea, a unique assemblage of ciliates, is a key group in deciphering
ciliate evolution history. However, the systematic relationships among members of this class …

Twisted tales: insights into genome diversity of ciliates using single-cell 'omics

XX Maurer-Alcalá, Y Yan, OA Pilling… - Genome Biology and …, 2018 - academic.oup.com
The emergence of robust single-cell 'omics techniques enables studies of uncultivable
species, allowing for the (re) discovery of diverse genomic features. In this study, we …

Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes

Y Feng, R Neme, LY Beh, X Chen, J Braun, MW Lu… - Elife, 2022 - elifesciences.org
Ciliates are microbial eukaryotes that undergo extensive programmed genome
rearrangement, a natural genome editing process that converts long germline chromosomes …

CRISPR-Cas genome editing technique for fish disease management: current study and future perspective

MA Ferdous, SI Islam, N Habib, M Almehmadi… - Microorganisms, 2022 - mdpi.com
Scientists have discovered many ways to treat bacteria, viruses, and parasites in
aquaculture; however, there is still an impossibility in finding a permanent solution for all …

Time-course analysis of nuclear events during conjugation in the marine ciliate Euplotes vannus and comparison with other ciliates (Protozoa, Ciliophora)

Y Jiang, T Zhang, A Vallesi, X Yang, F Gao - Cell Cycle, 2019 - Taylor & Francis
Ciliates represent a morphologically and genetically distinct group of single-celled
eukaryotes that segregate germline and somatic functions into two types of nuclei and …