Towards a fully automated algorithm driven platform for biosystems design

M HamediRad, R Chao, S Weisberg, J Lian… - Nature …, 2019 - nature.com
Large-scale data acquisition and analysis are often required in the successful
implementation of the design, build, test, and learn (DBTL) cycle in biosystems design …

Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage

A Espah Borujeni, J Zhang, H Doosthosseini… - Nature …, 2020 - nature.com
To perform their computational function, genetic circuits change states through a symphony
of genetic parts that turn regulator expression on and off. Debugging is frustrated by an …

Intelligent host engineering for metabolic flux optimisation in biotechnology

LJ Munro, DB Kell - Biochemical Journal, 2021 - portlandpress.com
Optimising the function of a protein of length N amino acids by directed evolution involves
navigating a 'search space'of possible sequences of some 20 N. Optimising the expression …

Automated design of protein-binding riboswitches for sensing human biomarkers in a cell-free expression system

GE Vezeau, LR Gadila, HM Salis - Nature communications, 2023 - nature.com
Cell-free genetically encoded biosensors have been developed to detect small molecules
and nucleic acids, but they have yet to be reliably engineered to detect proteins. Here we …

Optimization of Artificial Curcumin Biosynthesis in E. coli by Randomized 5′-UTR Sequences To Control the Multienzyme Pathway

SY Kang, KT Heo, YS Hong - ACS Synthetic Biology, 2018 - ACS Publications
One of the optimization strategies of an artificial biosynthetic metabolic flux with a
multienzyme pathway is when the enzyme concentrations are present at the appropriate …

[PDF][PDF] 合成生物学驱动的智能生物制造研究进展

王文方, 钟建江 - 生命科学, 2019 - lifescience.sinh.ac.cn
合成生物学的迅猛发展给包括药物和化学品在内的生物制造带来了强劲动力.
它助力生物合成关键元件的挖掘, 丰富了智能生物制造所必需的基础(催化) 元件库; …

[HTML][HTML] Native and non-native host assessment towards metabolic pathway reconstructions of plant natural products

I Pujari, A Thomas, VS Babu - Biotechnology Reports, 2021 - Elsevier
Plant-based biopreparations are reasonably priced and are devoid of viral, prion and
endotoxin contaminants. However, synthesizing these natural plant products by chemical …

[图书][B] Developing Nucleic Acid-Based Biosensor Platforms

GE Vezeau - 2021 - search.proquest.com
Biological systems are excellent sensing platforms, able to specifically detect a diverse array
of chemical and biomolecular stimuli in their environment and respond rapidly and …

[PDF][PDF] Real-time Optogenetics System for Controlling Gene Expression

G Soffer - 2020 - spectrum.library.concordia.ca
Synthetic biology, which combines tools from engineering, molecular biology and
computation, aims to explore the biological systems available in nature and engineer new …