Dynamics of posttranslational modification systems: Recent progress and future directions
Posttranslational modification of proteins is important for signal transduction, and hence
significant effort has gone toward understanding how posttranslational modification …
significant effort has gone toward understanding how posttranslational modification …
Information theory and signal transduction systems: from molecular information processing to network inference
Sensing and responding to the environment are two essential functions that all biological
organisms need to master for survival and successful reproduction. Developmental …
organisms need to master for survival and successful reproduction. Developmental …
Identifying parameter regions for multistationarity
Mathematical modelling has become an established tool for studying the dynamics of
biological systems. Current applications range from building models that reproduce …
biological systems. Current applications range from building models that reproduce …
Multistationarity in structured reaction networks
Many dynamical systems arising in biology and other areas exhibit multistationarity (two or
more positive steady states with the same conserved quantities). Although deciding …
more positive steady states with the same conserved quantities). Although deciding …
Atoms of multistationarity in chemical reaction networks
Chemical reaction systems are dynamical systems that arise in chemical engineering and
systems biology. In this work, we consider the question of whether the minimal (in a precise …
systems biology. In this work, we consider the question of whether the minimal (in a precise …
Topological descriptors of the parameter region of multistationarity: Deciding upon connectivity
ML Telek, E Feliu - PLOS Computational Biology, 2023 - journals.plos.org
Switch-like responses arising from bistability have been linked to cell signaling processes
and memory. Revealing the shape and properties of the set of parameters that lead to …
and memory. Revealing the shape and properties of the set of parameters that lead to …
Simplifying biochemical models with intermediate species
Mathematical models are increasingly being used to understand complex biochemical
systems, to analyse experimental data and make predictions about unobserved quantities …
systems, to analyse experimental data and make predictions about unobserved quantities …
The structure of MESSI biological systems
M Pérez Millán, A Dickenstein - SIAM Journal on Applied Dynamical Systems, 2018 - SIAM
We introduce a general framework for biological systems, called MESSI systems, that
describe Modifications of type Enzyme-Substrate or Swap with Intermediates, and we prove …
describe Modifications of type Enzyme-Substrate or Swap with Intermediates, and we prove …
Joining and decomposing reaction networks
In systems and synthetic biology, much research has focused on the behavior and design of
single pathways, while, more recently, experimental efforts have focused on how cross-talk …
single pathways, while, more recently, experimental efforts have focused on how cross-talk …
Catalytic constants enable the emergence of bistability in dual phosphorylation
C Conradi, M Mincheva - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
Dual phosphorylation of proteins is a principal component of intracellular signalling.
Bistability is considered an important property of such systems and its origin is not yet …
Bistability is considered an important property of such systems and its origin is not yet …