The genetics of transcription factor DNA binding variation

B Deplancke, D Alpern, V Gardeux - Cell, 2016 - cell.com
Most complex trait-associated variants are located in non-coding regulatory regions of the
genome, where they have been shown to disrupt transcription factor (TF)-DNA binding …

Regulatory SNPs: altered transcription factor binding sites implicated in complex traits and diseases

AO Degtyareva, EV Antontseva… - International journal of …, 2021 - mdpi.com
The vast majority of the genetic variants (mainly SNPs) associated with various human traits
and diseases map to a noncoding part of the genome and are enriched in its regulatory …

Understanding user privacy in Internet of Things environments

H Lee, A Kobsa - 2016 IEEE 3rd World Forum on Internet of …, 2016 - ieeexplore.ieee.org
During the past decade, user privacy has become an important issue in networked
computing environments. For instance, mobile applications and devices are increasingly …

Single nucleotide polymorphism in transcriptional regulatory regions and expression of environmentally responsive genes

X Wang, DJ Tomso, X Liu, DA Bell - Toxicology and applied pharmacology, 2005 - Elsevier
Single nucleotide polymorphisms (SNPs) in the human genome are DNA sequence
variations that can alter an individual's response to environmental exposure. SNPs in gene …

is-rSNP: a novel technique for in silico regulatory SNP detection

G Macintyre, J Bailey, I Haviv, A Kowalczyk - Bioinformatics, 2010 - academic.oup.com
Motivation: Determining the functional impact of non-coding disease-associated single
nucleotide polymorphisms (SNPs) identified by genome-wide association studies (GWAS) is …

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation

SB Montgomery, OL Griffith, MC Sleumer… - …, 2006 - academic.oup.com
Motivation: Our understanding of gene regulation is currently limited by our ability to
collectively synthesize and catalogue transcriptional regulatory elements stored in scientific …

Disease-associated variants in different categories of disease located in distinct regulatory elements

M Ma, Y Ru, LS Chuang, NY Hsu, LS Shi, J Hakenberg… - BMC genomics, 2015 - Springer
Background The invention of high throughput sequencing technologies has led to the
discoveries of hundreds of thousands of genetic variants associated with thousands of …

Thermodynamic database for protein–nucleic acid interactions (ProNIT)

P Prabakaran, J An, MM Gromiha, S Selvaraj… - …, 2001 - academic.oup.com
Motivation: Protein–nucleic acid interactions are fundamental to the regulation of gene
expression. In order to elucidate the molecular mechanism of protein–nucleic acid …

rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites

JV Ponomarenko, GV Orlova, TI Merkulova… - Human …, 2002 - Wiley Online Library
Since the human genome was sequenced in draft, single nucleotide polymorphism (SNP)
analysis has become one of the keynote fields of bioinformatics. We have developed an …

Candidate SNP markers of familial and sporadic Alzheimer's diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene …

P Ponomarenko, I Chadaeva, DA Rasskazov… - Frontiers in Aging …, 2017 - frontiersin.org
While year after year, conditions, quality, and duration of human lives have been improving
due to the progress in science, technology, education, and medicine, only eight diseases …