[HTML][HTML] Nanopore R10.4 metagenomic detection of blaCTX-M/blaDHA antimicrobial resistance genes and their genetic environments in stool
EI Campos-Madueno, C Aldeia, A Endimiani - Nature Communications, 2024 - nature.com
The increasing prevalence of gut colonization with CTX-M extended-spectrum β-lactamase-
and/or DHA plasmid-mediated AmpC-producing Escherichia coli is a concern. Here, we …
and/or DHA plasmid-mediated AmpC-producing Escherichia coli is a concern. Here, we …
A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens
Nanopore sequencing has shown the potential to democratize genomic pathogen
surveillance due to its ease of use and low entry cost. However, recent genotyping studies …
surveillance due to its ease of use and low entry cost. However, recent genotyping studies …
[HTML][HTML] Nanopore adaptive sampling enriches for antimicrobial resistance genes in microbial communities
DC Wrenn, DM Drown - GigaByte, 2023 - ncbi.nlm.nih.gov
Antimicrobial resistance (AMR) is a global public health threat. Environmental microbial
communities act as reservoirs for AMR, containing genes associated with resistance, their …
communities act as reservoirs for AMR, containing genes associated with resistance, their …
[HTML][HTML] Dynamic microbiome and mobile resistome are revealed in river biofilms from a multi-use watershed through long-read sequencing
The dissemination of antibiotic resistance (AR) through various environments and the role of
AR hotspots in public health crises are gaining increasing attention. Aquatic biofilms are …
AR hotspots in public health crises are gaining increasing attention. Aquatic biofilms are …
Nanopore adaptive sampling effectively enriches bacterial plasmids
Bacterial plasmids play a major role in the spread of antibiotic resistance genes. However,
their characterization via DNA sequencing suffers from the low abundance of plasmid DNA …
their characterization via DNA sequencing suffers from the low abundance of plasmid DNA …
Graph-based Nanopore Adaptive Sampling with GNASTy enables sensitive pneumococcal serotyping in complex samples
Serotype surveillance of Streptococcus pneumoniae (the pneumococcus) is critical for
understanding the effectiveness of current vaccination strategies. However, existing …
understanding the effectiveness of current vaccination strategies. However, existing …
Role and Relation of Microbiome to Address Antimicrobial Resistance
C Bhattacharya, MT Dinc, S Basu, R Chaudhuri… - … Resistance: Factors to …, 2024 - Springer
Antibiotic resistance (AMR) has become a significant worldwide health crisis, resulting in
millions of deaths and imposing substantial economic burdens. The extensive use of …
millions of deaths and imposing substantial economic burdens. The extensive use of …
In-silico enrichment of bacterial plasmids by chromosomal depletion using nanopore adaptive sampling
JU Ulrich, L Epping, T Pilz, B Walther, K Stingl… - bioRxiv, 2022 - biorxiv.org
Bacterial plasmids play a major role in the spread of antibiotic resistance genes. However,
their characterization via DNA sequencing suffers from the small proportion of plasmid DNA …
their characterization via DNA sequencing suffers from the small proportion of plasmid DNA …
Advanced Methods for Real-time Metagenomic Analysis of Nanopore Sequencing Data
JU Ulrich - 2023 - refubium.fu-berlin.de
Whole shotgun metagenomics sequencing allows researchers to retrieve information about
all organisms in a complex sample. This method enables microbiologists to detect …
all organisms in a complex sample. This method enables microbiologists to detect …
Role and Relation of Microbiome to Address Antimicrobial Resistance
Role and Relation of Microbiome to Address Antimicrobial Resistance Page 191 Chapter 6
Role and Relation of Microbiome to Address Antimicrobial Resistance Check for updates …
Role and Relation of Microbiome to Address Antimicrobial Resistance Check for updates …