The ruminant telomere-to-telomere (rt2t) consortium
Abstract Telomere-to-telomere (T2T) assemblies reveal new insights into the structure and
function of the previously 'invisible'parts of the genome and allow comparative analyses of …
function of the previously 'invisible'parts of the genome and allow comparative analyses of …
Enhancer–promoter specificity in gene transcription: molecular mechanisms and disease associations
MJ Friedman, T Wagner, H Lee… - … & Molecular Medicine, 2024 - nature.com
Although often located at a distance from their target gene promoters, enhancers are the
primary genomic determinants of temporal and spatial transcriptional specificity in …
primary genomic determinants of temporal and spatial transcriptional specificity in …
Chromatin conformation in development and disease
I Boltsis, F Grosveld, G Giraud… - Frontiers in Cell and …, 2021 - frontiersin.org
Chromatin domains and loops are important elements of chromatin structure and dynamics,
but much remains to be learned about their exact biological role and nature. Topological …
but much remains to be learned about their exact biological role and nature. Topological …
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation
C Anania, RD Acemel, J Jedamzick, A Bolondi… - Nature Genetics, 2022 - nature.com
Vertebrate genomes organize into topologically associating domains, delimited by
boundaries that insulate regulatory elements from nontarget genes. However, how boundary …
boundaries that insulate regulatory elements from nontarget genes. However, how boundary …
p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response
F Serra, A Nieto-Aliseda, L Fanlo-Escudero… - Nature …, 2024 - nature.com
Activation of the p53 tumor suppressor triggers a transcriptional program to control cellular
response to stress. However, the molecular mechanisms by which p53 controls gene …
response to stress. However, the molecular mechanisms by which p53 controls gene …
Deciphering principles of nucleosome interactions and impact of cancer-associated mutations from comprehensive interaction network analysis
Nucleosomes represent hubs in chromatin organization and gene regulation and interact
with a plethora of chromatin factors through different modes. In addition, alterations in …
with a plethora of chromatin factors through different modes. In addition, alterations in …
Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells
Background The AP-1 transcription factor, FBJ osteosarcoma oncogene (FOS), is induced in
adult muscle satellite cells (SCs) within hours following muscle damage and is required for …
adult muscle satellite cells (SCs) within hours following muscle damage and is required for …
Regulation of chromatin organization during animal regeneration
X Jia, W Lin, W Wang - Cell Regeneration, 2023 - Springer
Activation of regeneration upon tissue damages requires the activation of many
developmental genes responsible for cell proliferation, migration, differentiation, and tissue …
developmental genes responsible for cell proliferation, migration, differentiation, and tissue …
Fine mapping with epigenetic information and 3D structure
G Orozco - Seminars in Immunopathology, 2022 - Springer
Since 2005, thousands of genome-wide association studies (GWAS) have been published,
identifying hundreds of thousands of genetic variants that increase risk of complex traits …
identifying hundreds of thousands of genetic variants that increase risk of complex traits …