Major revisions in pancrustacean phylogeny and evidence of sensitivity to taxon sampling

JP Bernot, CL Owen, JM Wolfe, K Meland… - Molecular biology …, 2023 - academic.oup.com
The clade Pancrustacea, comprising crustaceans and hexapods, is the most diverse group
of animals on earth, containing over 80% of animal species and half of animal biomass. It …

An overview of current population genomics methods for the analysis of whole‐genome resequencing data in eukaryotes

YXC Bourgeois, BH Warren - Molecular Ecology, 2021 - Wiley Online Library
Characterizing the population history of a species and identifying loci underlying local
adaptation is crucial in functional ecology, evolutionary biology, conservation and …

A global catalog of whole-genome diversity from 233 primate species

LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin… - Science, 2023 - science.org
The rich diversity of morphology and behavior displayed across primate species provides an
informative context in which to study the impact of genomic diversity on fundamental …

A species-level timeline of mammal evolution integrating phylogenomic data

S Álvarez-Carretero, AU Tamuri, M Battini… - Nature, 2022 - nature.com
High-throughput sequencing projects generate genome-scale sequence data for species-
level phylogenies,–. However, state-of-the-art Bayesian methods for inferring timetrees are …

Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

A genomic timescale for placental mammal evolution

NM Foley, VC Mason, AJ Harris, KR Bredemeyer… - Science, 2023 - science.org
The precise pattern and timing of speciation events that gave rise to all living placental
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …

Phylogenomic resolution of the cetacean tree of life using target sequence capture

MR McGowen, G Tsagkogeorga… - Systematic …, 2020 - academic.oup.com
The evolution of cetaceans, from their early transition to an aquatic lifestyle to their
subsequent diversification, has been the subject of numerous studies. However, although …

[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life

PM Hime, AR Lemmon, ECM Lemmon… - Systematic …, 2021 - academic.oup.com
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …

Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …

Comparative Analysis of Chloroplast Genome and New Insights Into Phylogenetic Relationships of Polygonatum and Tribe Polygonateae

J Wang, J Qian, Y Jiang, X Chen, B Zheng… - Frontiers in Plant …, 2022 - frontiersin.org
Members of Polygonatum are perennial herbs that have been widely used in traditional
Chinese medicine to invigorate Qi, moisten the lung, and benefit the kidney and spleen …