A Hitchhiker's guide to RNA–RNA structure and interaction prediction tools
FYF Tieng, MR Abdullah-Zawawi… - Briefings in …, 2024 - academic.oup.com
RNA biology has risen to prominence after a remarkable discovery of diverse functions of
noncoding RNA (ncRNA). Most untranslated transcripts often exert their regulatory functions …
noncoding RNA (ncRNA). Most untranslated transcripts often exert their regulatory functions …
Qfold: a new modeling paradigm for the RNA folding problem
Ribonucleic acid (RNA) molecules play informational, structural, and metabolic roles in all
living cells. RNAs are chains of nucleotides containing bases {A, C, G, U} that interact via …
living cells. RNAs are chains of nucleotides containing bases {A, C, G, U} that interact via …
[HTML][HTML] An algebraic language for RNA pseudoknots comparison
Background RNA secondary structure comparison is a fundamental task for several studies,
among which are RNA structure prediction and evolution. The comparison can currently be …
among which are RNA structure prediction and evolution. The comparison can currently be …
[图书][B] PENGANTAR BIOLOGI: Teori Komprehensif
S Safrida, GF Pandinni, S Setyaningrum, R Pangestuti… - 2023 - books.google.com
Buku" Pengantar Biologi: Teori Komprehensif" adalah sebuah panduan komprehensif untuk
menjelajahi dunia biologi dengan pendekatan yang komprehensif. Buku ini merangkum …
menjelajahi dunia biologi dengan pendekatan yang komprehensif. Buku ini merangkum …
mRNA secondary structure prediction using utility-scale quantum computers
D Alevras, M Metkar, T Yamamoto, V Kumar… - arXiv preprint arXiv …, 2024 - arxiv.org
Recent advancements in quantum computing have opened new avenues for tackling long-
standing complex combinatorial optimization problems that are intractable for classical …
standing complex combinatorial optimization problems that are intractable for classical …
Persistent homology analysis of RNA
Topological data analysis has been recently used to extract meaningful information
frombiomolecules. Here we introduce the application of persistent homology, a topological …
frombiomolecules. Here we introduce the application of persistent homology, a topological …
[HTML][HTML] Process calculi may reveal the equivalence lying at the heart of RNA and proteins
S Maestri, E Merelli - Scientific Reports, 2019 - nature.com
The successful use of process calculi to specify behavioural models allows us to compare
RNA and protein folding processes from a new perspective. We model the folding processes …
RNA and protein folding processes from a new perspective. We model the folding processes …
Graph grammars according to the type of input and manipulated data: A survey
Graph grammars which generate graphs are a generalization of Chomsky grammars that
generate strings. During the last decades there has been a remarkable development of …
generate strings. During the last decades there has been a remarkable development of …
A Survey on Syntactic Pattern Recognition Methods in Bioinformatics
M Flasiński - Computer Science, 2024 - journals.agh.edu.pl
Formal tools and models of syntactic pattern recognition which are used in bioinformatics
are introduced and characterized in the paper. They include, among others: stochastic …
are introduced and characterized in the paper. They include, among others: stochastic …
RNA 3D Structure Prediction by Loop Motif Assembly
PA Henegar - 2023 - escholarship.mcgill.ca
RNA is a macromolecule, found in all living beings, composed of repeating building blocks
called nucleotides. It folds onto itself into complex structures, and can be studied at different …
called nucleotides. It folds onto itself into complex structures, and can be studied at different …