Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution
J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …
An updated infrageneric classification of the oaks: review of previous taxonomic schemes and synthesis of evolutionary patterns
In this chapter, we review major classification schemes proposed for oaks by John Claudius
Loudon, Anders Sandøe Ørsted, William Trelease, Otto Karl Anton Schwarz, Aimée …
Loudon, Anders Sandøe Ørsted, William Trelease, Otto Karl Anton Schwarz, Aimée …
ipyrad: Interactive assembly and analysis of RADseq datasets
DAR Eaton, I Overcast - Bioinformatics, 2020 - academic.oup.com
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
Genomic landscape of the global oak phylogeny
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity
Summary Oaks (Quercus, Fagaceae) are the dominant tree genus of North America in
species number and biomass, and Mexico is a global center of oak diversity. Understanding …
species number and biomass, and Mexico is a global center of oak diversity. Understanding …
Misconceptions on missing data in RAD-seq phylogenetics with a deep-scale example from flowering plants
DAR Eaton, EL Spriggs, B Park… - Systematic …, 2017 - academic.oup.com
Restriction-site associated DNA (RAD) sequencing and related methods rely on the
conservation of enzyme recognition sites to isolate homologous DNA fragments for …
conservation of enzyme recognition sites to isolate homologous DNA fragments for …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
The utility of single nucleotide polymorphism (SNP) data in phylogenetics
Resolving the genealogy of life—the phylogenetic relationships that describe the
evolutionary history of species—remains one of the great challenges of systematic biology …
evolutionary history of species—remains one of the great challenges of systematic biology …
Historical introgression among the American live oaks and the comparative nature of tests for introgression
Introgressive hybridization challenges the concepts we use to define species and infer
phylogenetic relationships. Methods for inferring historical introgression from the genomes …
phylogenetic relationships. Methods for inferring historical introgression from the genomes …