Redundancy analysis: A Swiss Army Knife for landscape genomics

T Capblancq, BR Forester - Methods in Ecology and Evolution, 2021 - Wiley Online Library
Landscape genomics identifies how spatial and environmental factors structure the amount
and distribution of genetic variation among populations. Landscape genomic analyses have …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

LEA: An R package for landscape and ecological association studies

E Frichot, O François - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …

LFMM 2: fast and accurate inference of gene-environment associations in genome-wide studies

K Caye, B Jumentier, J Lepeule… - Molecular biology and …, 2019 - academic.oup.com
Gene-environment association (GEA) studies are essential to understand the past and
ongoing adaptations of organisms to their environment, but those studies are complicated by …

The search for loci under selection: trends, biases and progress

CW Ahrens, PD Rymer, A Stow, J Bragg… - Molecular …, 2018 - Wiley Online Library
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …

Controlling false discoveries in genome scans for selection

O François, H Martins, K Caye… - Molecular ecology, 2016 - Wiley Online Library
Population differentiation (PD) and ecological association (EA) tests have recently emerged
as prominent statistical methods to investigate signatures of local adaptation using …

Aquatic landscape genomics and environmental effects on genetic variation

JA Grummer, LB Beheregaray, L Bernatchez… - Trends in ecology & …, 2019 - cell.com
Aquatic species represent a vast diversity of metazoans, provide humans with the most
abundant animal protein source, and are of increasing conservation concern, yet landscape …

The analysis of polyploid genetic data

PG Meirmans, S Liu, PH van Tienderen - Journal of Heredity, 2018 - academic.oup.com
Though polyploidy is an important aspect of the evolutionary genetics of both plants and
animals, the development of population genetic theory of polyploids has seriously lagged …

Genome resequencing reveals rapid, repeated evolution in the Colorado potato beetle

B Pélissié, YH Chen, ZP Cohen… - Molecular Biology …, 2022 - academic.oup.com
Insecticide resistance and rapid pest evolution threatens food security and the development
of sustainable agricultural practices, yet the evolutionary mechanisms that allow pests to …

A new FST‐based method to uncover local adaptation using environmental variables

P De Villemereuil, OE Gaggiotti - Methods in Ecology and …, 2015 - Wiley Online Library
Genome‐scan methods are used for screening genomewide patterns of DNA polymorphism
to detect signatures of positive selection. There are two main types of methods:(i)'outlier' …