Redundancy analysis: A Swiss Army Knife for landscape genomics
T Capblancq, BR Forester - Methods in Ecology and Evolution, 2021 - Wiley Online Library
Landscape genomics identifies how spatial and environmental factors structure the amount
and distribution of genetic variation among populations. Landscape genomic analyses have …
and distribution of genetic variation among populations. Landscape genomic analyses have …
A practical guide to environmental association analysis in landscape genomics
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …
factors that shape adaptive genetic variation and the gene variants that drive local …
LEA: An R package for landscape and ecological association studies
E Frichot, O François - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …
studies aim at detecting allele frequencies that exhibit significant statistical association with …
LFMM 2: fast and accurate inference of gene-environment associations in genome-wide studies
K Caye, B Jumentier, J Lepeule… - Molecular biology and …, 2019 - academic.oup.com
Gene-environment association (GEA) studies are essential to understand the past and
ongoing adaptations of organisms to their environment, but those studies are complicated by …
ongoing adaptations of organisms to their environment, but those studies are complicated by …
The search for loci under selection: trends, biases and progress
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …
environmental association analyses (EAAs) are popular approaches that provide insight into …
Controlling false discoveries in genome scans for selection
O François, H Martins, K Caye… - Molecular ecology, 2016 - Wiley Online Library
Population differentiation (PD) and ecological association (EA) tests have recently emerged
as prominent statistical methods to investigate signatures of local adaptation using …
as prominent statistical methods to investigate signatures of local adaptation using …
Aquatic landscape genomics and environmental effects on genetic variation
Aquatic species represent a vast diversity of metazoans, provide humans with the most
abundant animal protein source, and are of increasing conservation concern, yet landscape …
abundant animal protein source, and are of increasing conservation concern, yet landscape …
The analysis of polyploid genetic data
PG Meirmans, S Liu, PH van Tienderen - Journal of Heredity, 2018 - academic.oup.com
Though polyploidy is an important aspect of the evolutionary genetics of both plants and
animals, the development of population genetic theory of polyploids has seriously lagged …
animals, the development of population genetic theory of polyploids has seriously lagged …
Genome resequencing reveals rapid, repeated evolution in the Colorado potato beetle
Insecticide resistance and rapid pest evolution threatens food security and the development
of sustainable agricultural practices, yet the evolutionary mechanisms that allow pests to …
of sustainable agricultural practices, yet the evolutionary mechanisms that allow pests to …
A new FST‐based method to uncover local adaptation using environmental variables
P De Villemereuil, OE Gaggiotti - Methods in Ecology and …, 2015 - Wiley Online Library
Genome‐scan methods are used for screening genomewide patterns of DNA polymorphism
to detect signatures of positive selection. There are two main types of methods:(i)'outlier' …
to detect signatures of positive selection. There are two main types of methods:(i)'outlier' …